RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ACTL10Q5JWF8 245 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 LRTM2Q8N967 370 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 OR51G1Q8NGK1 321 aa7.88□□□□□ -1.15
VPS39-208ENST00000564994 SLC25A21Q9BQT8 299 aaPredicted RBP7.88□□□□□ -1.15
VPS39-208ENST00000564994 C11orf68Q9H3H3 251 aaKnown RBP7.88□□□□□ -1.15
VPS39-208ENST00000564994 FAM90A26D6RGX4 464 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 SFT2D2O95562 160 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 IAPPP10997 89 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 VAMP1P23763 118 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 S100A5P33763 92 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 GPX4P36969 197 aaPredicted RBP7.87□□□□□ -1.15
VPS39-208ENST00000564994 PPP1R1AQ13522 171 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 PSMG4Q5JS54 123 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 Q8NAQ8 132 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 C11orf45Q8TAV5 145 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 RNF125Q96EQ8 232 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 RAB40CQ96S21 281 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 SRRQ9GZT4 340 aa7.87□□□□□ -1.15
VPS39-208ENST00000564994 KLK5Q9Y337 293 aaPredicted RBP7.87□□□□□ -1.15
VPS39-208ENST00000564994 ZFP92A6NM28 416 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 RBMY1A1P0DJD3 496 aaKnown RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 RBMY1CP0DJD4 496 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 SPP1P10451 314 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 SLC25A6P12236 298 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 EIF2B2P49770 351 aaKnown RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 AP2S1P53680 142 aaPredicted RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 ATP5IP56385 69 aaPredicted RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 RBMY1FQ15415 496 aaKnown RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 MORN3Q6PF18 240 aaPredicted RBP7.86□□□□□ -1.15
VPS39-208ENST00000564994 SIGLEC15Q6ZMC9 328 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 CSNK1G2-AS1Q8NCQ2 148 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 DEDD2Q8WXF8 326 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 NRN1Q9NPD7 142 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 CLEC5AQ9NY25 188 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 FBXL17Q9UF56 701 aa7.86□□□□□ -1.15
VPS39-208ENST00000564994 DNAH6Q9C0G6 4158 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 IGKV1OR2-108A0A075B7D4 117 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 PIGBOS1A0A0B4J2F0 54 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 IGHV4-28A0A0C4DH34 117 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 ZNF705EA8MWA4 302 aaPredicted RBP7.85□□□□□ -1.15
VPS39-208ENST00000564994 PRSS46E5RG02 174 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 HOXB5P09067 269 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 BAK1Q16611 211 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 GSG1LQ6UXU4 331 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 CENPSQ8N2Z9 138 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 SLC35E1Q96K37 410 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 PBDC1Q9BVG4 233 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 MAGT1Q9H0U3 335 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 SEPSECSQ9HD40 501 aaKnown RBP7.85□□□□□ -1.15
VPS39-208ENST00000564994 TMED3Q9Y3Q3 217 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 X6R8D5 127 aa7.85□□□□□ -1.15
VPS39-208ENST00000564994 ZNF701M0R085 212 aaPredicted RBP7.84□□□□□ -1.15
VPS39-208ENST00000564994 DEFB1P60022 68 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 LYZP61626 148 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 RAB11AP62491 216 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 OR2F1Q13607 317 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 TMEM41BQ5BJD5 291 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 SPANXN2Q5MJ10 180 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 GGNBP1Q5YKI7 109 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 OR8G2PQ6IF36 304 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 THAP8Q8NA92 274 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 TRGV9Q99603 122 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 SDHCQ99643 169 aaPredicted RBP7.84□□□□□ -1.15
VPS39-208ENST00000564994 WDR12Q9GZL7 423 aaKnown RBP7.84□□□□□ -1.15
VPS39-208ENST00000564994 MFFQ9GZY8 342 aa7.84□□□□□ -1.15
VPS39-208ENST00000564994 DNAH2Q9P225 4427 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 ELOA3CA0A087WX78 387 aaPredicted RBP7.83□□□□□ -1.16
VPS39-208ENST00000564994 C9orf170A2RU37 121 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 H3BMM0 161 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 WRBO00258 174 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 SOCS3O14543 225 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 SYNGR2O43760 224 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 MED6O75586 246 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 ADAP1O75689 374 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 NDUFB6O95139 128 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 MIFP14174 115 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 SNRPD3P62318 126 aaKnown RBP7.83□□□□□ -1.16
VPS39-208ENST00000564994 GDF5OSQ5U4N7 250 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 RPP25LQ8N5L8 163 aaKnown RBP7.83□□□□□ -1.16
VPS39-208ENST00000564994 PAIP2BQ9ULR5 123 aaKnown RBP7.83□□□□□ -1.16
VPS39-208ENST00000564994 FLVCR2Q9UPI3 526 aa7.83□□□□□ -1.16
VPS39-208ENST00000564994 SNRPGP15A8MWD9 76 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 H3BP45 60 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 DEDDO75618 318 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 HLA-DRB4P13762 266 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 BTCP35070 178 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 NUP62P37198 522 aaPredicted RBP7.82□□□□□ -1.16
VPS39-208ENST00000564994 NKX2-1P43699 371 aaPredicted RBP7.82□□□□□ -1.16
VPS39-208ENST00000564994 UBE2MP61081 183 aaKnown RBP7.82□□□□□ -1.16
VPS39-208ENST00000564994 ID3Q02535 119 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 LGALS9CQ6DKI2 356 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 TMEM182Q6ZP80 229 aaPredicted RBP7.82□□□□□ -1.16
VPS39-208ENST00000564994 CIB3Q96Q77 187 aaPredicted RBP7.82□□□□□ -1.16
VPS39-208ENST00000564994 HRH4Q9H3N8 390 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 XCL2Q9UBD3 114 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 TBC1D24Q9ULP9 559 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 HLA-DRB4X5D2U9 266 aa7.82□□□□□ -1.16
VPS39-208ENST00000564994 LINC00854A0A1B0GVQ3 168 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 NAP1L6A6NFF2 107 aa7.81□□□□□ -1.16
VPS39-208ENST00000564994 FABP1P07148 127 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms