RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ST20Q9HBF5 79 aa14.12□□□□□ -0.15
SYNE3-202ENST00000553340 SH2D7A6NKC9 451 aaPredicted RBP14.11□□□□□ -0.15
SYNE3-202ENST00000553340 PRR31Q5SQ13 230 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 ETFRF1Q6IPR1 90 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 FMC1Q96HJ9 113 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 LINC00322Q6ZN03 302 aaPredicted RBP14.11□□□□□ -0.15
SYNE3-202ENST00000553340 C5orf17Q8NAS9 161 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 RNASE8Q8TDE3 154 aaKnown RBP14.11□□□□□ -0.15
SYNE3-202ENST00000553340 IGHV1-24A0A0C4DH33 117 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 SYS1-DBNDD2H3BUS1 97 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 LEPROTL1O95214 131 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 GTSF1Q8WW33 167 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 DAZAP1Q96EP5 407 aaKnown RBP14.11□□□□□ -0.15
SYNE3-202ENST00000553340 PGLYRP4Q96LB8 373 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 ZNF492Q9P255 531 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 WASHC3Q9Y3C0 194 aa14.11□□□□□ -0.15
SYNE3-202ENST00000553340 M0QZ24 198 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 WT1P19544 449 aaPredicted RBP14.1□□□□□ -0.15
SYNE3-202ENST00000553340 TMEM186Q96B77 213 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 GUCD1Q96NT3 240 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 C19orf71A6NCJ1 209 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 LTAP01374 205 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 IGLV2-23P01705 113 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 FBLN7Q53RD9 439 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 FAM71F2Q6NXP2 309 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 GFRA4Q9GZZ7 299 aa14.1□□□□□ -0.15
SYNE3-202ENST00000553340 NAV3Q8IVL0 2385 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 A0A1W2PPI3 338 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 C22orf46C9J442 243 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 CCL8P80075 99 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 DIAPH2-AS1Q14236 149 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 VMA21Q3ZAQ7 101 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 TMEM200BQ69YZ2 307 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 RBPMS2Q6ZRY4 209 aaKnown RBP14.09□□□□□ -0.15
SYNE3-202ENST00000553340 C22orf15Q8WYQ4 148 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 ST6GALNAC6Q969X2 333 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 IGHV2-70DA0A0C4DH43 119 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 K7EP13 123 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 SLC25A17O43808 307 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 TNFRSF1AP19438 455 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 ARFGEF3Q5TH69 2177 aa14.09□□□□□ -0.15
SYNE3-202ENST00000553340 PLCE1Q9P212 2302 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 CD24P25063 80 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 LHFPL4Q7Z7J7 247 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 TRGV9Q99603 122 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 TMEM191AQ9H0A3 160 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 TCRAP04437 139 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 CRYGCP07315 174 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 RBX1P62877 108 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 LRRC10Q5BKY1 277 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 OR4C5Q8NGB2 326 aa14.08□□□□□ -0.16
SYNE3-202ENST00000553340 HSBP1L1C9JCN9 74 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 CHEK1O14757 476 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 CD40P25942 277 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 MPV17L2Q567V2 206 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 LINC00173Q6ZV60 143 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 RPRMLQ8N4K4 120 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 NDFIP1Q9BT67 221 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 Q9H3A6 140 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 LOC105371242A0A075B767 164 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 hDV102S1A0JD36 115 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 FAM231BA6NCW3 169 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 LIPFP07098 398 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 OR5AL1P0C617 328 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 GP9P14770 177 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 ZNF137PP52743 207 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 HCP5Q6MZN7 132 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 FAM215AQ9Y5M1 114 aa14.07□□□□□ -0.16
SYNE3-202ENST00000553340 LOC400499M0QZD8 3231 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 LOC102724200A0A096LPH7 203 aaPredicted RBP14.06□□□□□ -0.16
SYNE3-202ENST00000553340 VAMP3Q15836 100 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 SLC25A34Q6PIV7 304 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 LINC00311Q8N616 119 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 H1FXQ92522 213 aaKnown RBP14.06□□□□□ -0.16
SYNE3-202ENST00000553340 TPSG1Q9NRR2 321 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 ZNF835Q9Y2P0 537 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 MC5RP33032 325 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 RUSC1-AS1Q66K80 236 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 MAP1LC3CQ9BXW4 147 aa14.06□□□□□ -0.16
SYNE3-202ENST00000553340 FAM87AP0C7U9 286 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 C8orf31Q8N9H6 132 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 TP73-AS1Q9UF72 201 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 TRAV30A0A087WSZ9 112 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 H3BTX0 84 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 COL8A1P27658 744 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 FAM27E3Q08E93 113 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 DEFB109BQ30KR1 87 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 C22orf34Q6ZV56 151 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 TMEM116Q8NCL8 245 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 C8orf46Q8TAG6 207 aa14.05□□□□□ -0.16
SYNE3-202ENST00000553340 NUDT3O95989 172 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 ZADH2Q8N4Q0 377 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 NUP37Q8NFH4 326 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.04□□□□□ -0.16
SYNE3-202ENST00000553340 NPIPB6E9PJ23 425 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 FCN3O75636 299 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 LGALS7P47929 136 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 C1orf185Q5T7R7 199 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 PVRIGQ6DKI7 326 aa14.04□□□□□ -0.16
SYNE3-202ENST00000553340 PET117Q6UWS5 81 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms