RNA–Protein interactions for RNA: ENST00000550418.5

RBFOX1-212, Transcript of RNA binding fox-1 homolog 1, humanhuman

TSL 1 (best) BASIC

Gene RBFOX1, Length 4,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX1-212ENST00000550418 ZNF56Q15929 161 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 MRPS18CQ9Y3D5 142 aaKnown RBP13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 TFF1P04155 84 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 TDGF1P13385 188 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 NTF4P34130 210 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 KIR3DS1Q14943 382 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 Q6ZWC4 215 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 IGKV3D-15A0A087WSY6 115 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 TRBV6-6A0A0A6YYG2 114 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 A8MWV9 139 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 IGKV3-15P01624 115 aa13.08□□□□□ -0.32
RBFOX1-212ENST00000550418 CCL21O00585 134 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 MEIG1Q5JSS6 88 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 SLC25A2Q9BXI2 301 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 A0A1B0GWJ7 208 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 DNAL4O96015 105 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 PAX2Q02962 417 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 C1orf147Q96MC9 270 aaPredicted RBP13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 LINC00312Q9Y6C7 94 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 DOPEY2Q9Y3R5 2298 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 CLPSP04118 112 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 FAM159AQ6UWV7 190 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 C21orf62Q9NYP8 219 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 C15orf62A8K5M9 175 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 RNFT1Q5M7Z0 435 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 SMPXQ9UHP9 88 aa13.07□□□□□ -0.32
RBFOX1-212ENST00000550418 INTS1Q8N201 2190 aaKnown RBP13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 IGHV2OR16-5A0A0B4J2B6 119 aa13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 COL6A6A6NMZ7 2263 aa13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 DIDO1Q9BTC0 2240 aaKnown RBP13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 PF4V1P10720 104 aa13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 ASIPP42127 132 aa13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 NKX2-8O15522 239 aa13.06□□□□□ -0.32
RBFOX1-212ENST00000550418 PSPNO60542 156 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 IGLV3-19P01714 112 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 IGHV1-2P23083 117 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 RPRMLQ8N4K4 120 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 C1orf162Q8NEQ5 155 aaPredicted RBP13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 MUC6Q6W4X9 2439 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 ZNF883P0CG24 379 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 YPEL3P61236 119 aaPredicted RBP13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 SRSF1Q07955 248 aaKnown RBP eCLIP13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 ASCL4Q6XD76 172 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 MRAP2Q96G30 205 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 LYPD6BQ8NI32 183 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 LOC102723996A0A087X1L8 192 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 CSRP1P21291 193 aaKnown RBP13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 IL15RAQ13261 267 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 OR10W1Q8NGF6 305 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 ASCL2Q99929 193 aa13.05□□□□□ -0.32
RBFOX1-212ENST00000550418 LHX2P50458 406 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 PAX9P55771 341 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 GAGE2BQ13066 116 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 LINC01559Q495D7 138 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 GAGE2EQ4V326 116 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 GAGE2DQ9UEU5 116 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 IGHV3-49A0A0A0MS15 119 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 ZNF815PA8K554 130 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 D6R8Y8 96 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 ZNF138P52744 262 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 C18orf32Q8TCD1 76 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 ZNF726P1Q15940 193 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 GTSCR1Q86UQ5 136 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 RNF125Q96EQ8 232 aa13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 MCRIP2Q9BUT9 160 aaKnown RBP13.04□□□□□ -0.32
RBFOX1-212ENST00000550418 TSC2P49815 1807 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 CCL3L1P16619 93 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 COX6B1P14854 86 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 JMJD8Q96S16 334 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 RNF115Q9Y4L5 304 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 NLRC5Q86WI3 1866 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 IGHV3-23P01764 117 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 PVRIGQ6DKI7 326 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 ZFAND6Q6FIF0 208 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 KIR3DL3Q8N743 410 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 EEF1AKMT3Q96AZ1 226 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 TRAV3A0A0B4J244 114 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 TCRAP04437 139 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 FOXG1P55316 489 aaPredicted RBP13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 ATP5G2Q06055 141 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 C8orf46Q8TAG6 207 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 UBTD1Q9HAC8 227 aa13.03□□□□□ -0.32
RBFOX1-212ENST00000550418 IGHV3OR16-8A0A075B7F1 116 aa13.02□□□□□ -0.32
RBFOX1-212ENST00000550418 CEP350Q5VT06 3117 aa13.02□□□□□ -0.32
RBFOX1-212ENST00000550418 LINC00473A8K010 186 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 EVI2AP22794 236 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 DPM3Q9P2X0 92 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 LIME1Q9H400 295 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 PCNX1Q96RV3 2341 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 CENPFP49454 3210 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 PLXNA3P51805 1871 aa13.02□□□□□ -0.33
RBFOX1-212ENST00000550418 IGHV3-66A0A0C4DH42 116 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 ORMDL2Q53FV1 153 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 HEATR5AQ86XA9 2040 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 FAM231BA6NCW3 169 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 PSG3Q16557 428 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 TMEM95Q3KNT9 176 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 STPG4Q8N801 248 aa13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 CHTOPQ9Y3Y2 248 aaKnown RBP13.01□□□□□ -0.33
RBFOX1-212ENST00000550418 PPIFP30405 207 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms