RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 MBD6Q96DN6 1003 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 F11RQ9Y624 299 aaKnown RBP14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 BMPR1BO00238 502 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 RBP4P02753 201 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 GPX1P07203 203 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 TPTE2P1Q5T6R2 138 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 WIPF2Q8TF74 440 aaPredicted RBP14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 SMIM12Q96EX1 92 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 ZNF586Q9NXT0 402 aa14.35□□□□□ -0.11
CCHCR1-228ENST00000509552 IGHV3-21A0A0B4J1V1 117 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 COX7A1P24310 79 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 PAX2Q02962 417 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 PRB3Q04118 309 aaPredicted RBP14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 TEX43Q6ZNM6 134 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 C19orf35Q6ZS72 473 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 C8orf46Q8TAG6 207 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 LINC01560Q8TB33 94 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 KCNS1Q96KK3 526 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 TMEM68Q96MH6 324 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 FAM103A1Q9BTL3 118 aaKnown RBP14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 PLXNB1O43157 2135 aa14.34□□□□□ -0.11
CCHCR1-228ENST00000509552 SSTP61278 116 aa14.33□□□□□ -0.11
CCHCR1-228ENST00000509552 TEX22C9J3V5 150 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 FAM87AP0C7U9 286 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 CDKN1AP38936 164 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 AMTP48728 403 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 PLP1P60201 277 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 PLGLAQ15195 96 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 ASPHD1Q5U4P2 390 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 NUP35Q8NFH5 326 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 VN1R17PQ8TDU5 208 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 TSKUQ8WUA8 353 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 GPR82Q96P67 336 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 RNF5Q99942 180 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 ATG101Q9BSB4 218 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 FBXL15Q9H469 300 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 CBLN4Q9NTU7 201 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 RPH3ALQ9UNE2 315 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 TBL2Q9Y4P3 447 aaKnown RBP14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 KLF12Q9Y4X4 402 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 ADGRG4Q8IZF6 3080 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 POLEQ07864 2286 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 C5orf17Q8NAS9 161 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 HIGD1AQ9Y241 93 aa14.32□□□□□ -0.12
CCHCR1-228ENST00000509552 A0A1W2PS18 150 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 FAM90A27PA6NNH2 459 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 GP9P14770 177 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 CA7P43166 264 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 LHFPL4Q7Z7J7 247 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 OR8B3Q8NGG8 313 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 SRSF12Q8WXF0 261 aaKnown RBP14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 OR8B2Q96RD0 313 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 KRTDAPP60985 99 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 FMC1Q96HJ9 113 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 RCHY1Q96PM5 261 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 VAMP8Q9BV40 100 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 SCNM1Q9BWG6 230 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 NRN1Q9NPD7 142 aa14.31□□□□□ -0.12
CCHCR1-228ENST00000509552 M0R143 59 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 PMCHP20382 165 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 SLAQ13239 276 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 C20orf144Q9BQM9 153 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 C7orf69Q9H7B7 122 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 ONECUT1Q9UBC0 465 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 FBXL7Q9UJT9 491 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 HIGD1CA8MV81 97 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 EREGO14944 169 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 ZNF324O75467 553 aaPredicted RBP14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 LYZP61626 148 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 ZNF672Q499Z4 452 aaPredicted RBP14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 SGK494Q96LW2 274 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 NEU1Q99519 415 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 Q9H3A6 140 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 MALRD1Q5VYJ5 2156 aa14.3□□□□□ -0.12
CCHCR1-228ENST00000509552 KALRNO60229 2985 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 TOMM40O96008 361 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 LIPFP07098 398 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 RNF224P0DH78 156 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 LEMD1Q68G75 181 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 GSX1Q9H4S2 264 aaPredicted RBP14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 SPTBN2O15020 2390 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 MUC6Q6W4X9 2439 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 CNIH1O95406 144 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 IGLC1P0CG04 106 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 PSG1P11464 419 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 ZNF705AQ6ZN79 300 aaPredicted RBP14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 ATP5L2Q7Z4Y8 100 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 RASL11BQ9BPW5 248 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 SRSF8Q9BRL6 282 aaKnown RBP14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 MRPL27Q9P0M9 148 aaKnown RBP14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 PAM16Q9Y3D7 125 aa14.29□□□□□ -0.12
CCHCR1-228ENST00000509552 DIRC3C9JPN6 131 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 LY6LH3BQJ8 138 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 TCRAP04437 139 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 TDRG1Q3Y452 100 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 FBXL19-AS1Q494R0 122 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 MLST8Q9BVC4 326 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 SNHG12Q9BXW3 62 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 DMXL2Q8TDJ6 3036 aa14.28□□□□□ -0.12
CCHCR1-228ENST00000509552 C18orf32Q8TCD1 76 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms