RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TCRBV4S1A1TA0A5B7 111 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 BUB1B-PAK6H3BSN5 160 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 MSMBP08118 114 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 PRSS8Q16651 343 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 OR1L4Q8NGR5 311 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 SSBP3Q9BWW4 388 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-202ENST00000374876 HIF1ANQ9NWT6 349 aa12.39□□□□□ -0.43
CCDC40-202ENST00000374876 PSMB11A5LHX3 300 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 LINC00587B1AMM8 73 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 COX7A1P24310 79 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 BPIFB3P59826 476 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 UBE2L3P68036 154 aaKnown RBP12.38□□□□□ -0.43
CCDC40-202ENST00000374876 TNXAQ16473 311 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 MRGPRG-AS1Q2M3A8 158 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 CENPWQ5EE01 88 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 COA6Q5JTJ3 125 aaKnown RBP12.38□□□□□ -0.43
CCDC40-202ENST00000374876 BEND2Q8NDZ0 799 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 SLC25A2Q9BXI2 301 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 TRAPPC1Q9Y5R8 145 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 SONP18583 2426 aaKnown RBP12.38□□□□□ -0.43
CCDC40-202ENST00000374876 WNK2Q9Y3S1 2297 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 TRAV5A0A0B4J249 113 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 IGHV1-3A0A0C4DH29 117 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 A0A1W2PRE2 83 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 IGLC7A0M8Q6 106 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 GGTLC3B5MD39 225 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 RBP4P02753 201 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 RPL27AP46776 148 aaKnown RBP12.38□□□□□ -0.43
CCDC40-202ENST00000374876 SELENOTP62341 195 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 SUMO1P63165 101 aaKnown RBP12.38□□□□□ -0.43
CCDC40-202ENST00000374876 ZNF90Q03938 601 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 C10orf113Q5VZT2 155 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 ETFRF1Q6IPR1 90 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 THAP8Q8NA92 274 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 OR5AU1Q8NGC0 362 aa12.38□□□□□ -0.43
CCDC40-202ENST00000374876 CNTFRP26992 372 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 ERVFC1-1P60608 527 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 RPL15P61313 204 aaKnown RBP12.37□□□□□ -0.43
CCDC40-202ENST00000374876 HCP5Q6MZN7 132 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 RPEQ96AT9 228 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 MISP3Q96FF7 219 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 FAM167A-AS1Q96KT0 104 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 IL36BQ9NZH7 164 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 AMMECR1Q9Y4X0 333 aaPredicted RBP12.37□□□□□ -0.43
CCDC40-202ENST00000374876 HIVEP2P31629 2446 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 IGKV1D-37A0A075B6S9 117 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 INAFM1C9JVW0 142 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 CTAG1AP78358 180 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 MORN5Q5VZ52 161 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 C22orf15Q8WYQ4 148 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 ZNF355PQ9NSJ1 428 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 ONECUT1Q9UBC0 465 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 SIGLEC9Q9Y336 463 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 DMRT1Q9Y5R6 373 aa12.37□□□□□ -0.43
CCDC40-202ENST00000374876 SLC17A3O00476 420 aa12.36□□□□□ -0.43
CCDC40-202ENST00000374876 CRYGBP07316 175 aa12.36□□□□□ -0.43
CCDC40-202ENST00000374876 COMPP49747 757 aaPredicted RBP12.36□□□□□ -0.43
CCDC40-202ENST00000374876 CNN1P51911 297 aaKnown RBP12.36□□□□□ -0.43
CCDC40-202ENST00000374876 TIGITQ495A1 244 aa12.36□□□□□ -0.43
CCDC40-202ENST00000374876 MRPL36Q9P0J6 103 aaKnown RBP12.36□□□□□ -0.43
CCDC40-202ENST00000374876 TRAV9-1A0A075B6T8 112 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 APELAP0DMC3 54 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 OR5I1Q13606 314 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 PPP1R27Q86WC6 154 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 C8orf46Q8TAG6 207 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 PAXXQ9BUH6 204 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 NAV3Q8IVL0 2385 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 LOC105371242A0A075B767 164 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 TRAV20A0A0B4J274 112 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 C22orf46C9J442 243 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 AMBPP02760 352 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 LIPFP07098 398 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 RPEL1Q2QD12 228 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 CDPF1Q6NVV7 123 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 PATE2Q6UY27 113 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 IL17RELQ6ZVW7 336 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 TNFRSF19Q9NS68 423 aa12.35□□□□□ -0.43
CCDC40-202ENST00000374876 PYYP10082 97 aa12.34□□□□□ -0.43
CCDC40-202ENST00000374876 PAX2Q02962 417 aa12.34□□□□□ -0.43
CCDC40-202ENST00000374876 POLR3KQ9Y2Y1 108 aaPredicted RBP12.34□□□□□ -0.43
CCDC40-202ENST00000374876 AVPP01185 164 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 CRYGCP07315 174 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 MFAP2P55001 183 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 DNLZQ5SXM8 178 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 PVRIGQ6DKI7 326 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 LINC00305Q7Z4B0 112 aa12.33□□□□□ -0.43
CCDC40-202ENST00000374876 FN1P02751 2386 aaKnown RBP12.33□□□□□ -0.43
CCDC40-202ENST00000374876 ZFHX3Q15911 3703 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 CORTO00230 105 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 MOSP00540 346 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 HIST1H1BP16401 226 aaKnown RBP12.33□□□□□ -0.44
CCDC40-202ENST00000374876 ORM2P19652 201 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 FAM120AOSQ5T036 256 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 C19orf35Q6ZS72 473 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 FBXL15Q9H469 300 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 C7orf69Q9H7B7 122 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 V9GYV3 84 aa12.33□□□□□ -0.44
CCDC40-202ENST00000374876 RD3LP0DJH9 198 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 YPEL3P61236 119 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-202ENST00000374876 PLGLAQ15195 96 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms