RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 OR4F17Q8NGA8 305 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 RNF138Q8WVD3 245 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 ZNRD1Q9P1U0 126 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 TP73-AS1Q9UF72 201 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 TRAV30A0A087WSZ9 112 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 Q5PR19 223 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 ASCL2Q99929 193 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 LSM4Q9Y4Z0 139 aaKnown RBP9.07□□□□□ -0.96
CLN3-244ENST00000636147 ZGRF1Q86YA3 2104 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 PMS2P5A8MQ11 134 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 K7ESF4 209 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 COX7A1P24310 79 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 PRB3Q04118 309 aaPredicted RBP9.07□□□□□ -0.96
CLN3-244ENST00000636147 OCIAD2Q56VL3 154 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 RPP21Q9H633 154 aaKnown RBP9.07□□□□□ -0.96
CLN3-244ENST00000636147 PRDM6Q9NQX0 595 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 SLC25A10Q9UBX3 287 aaPredicted RBP9.07□□□□□ -0.96
CLN3-244ENST00000636147 TP53TG3Q9ULZ0 132 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 RNF114Q9Y508 228 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 TRAV8-1A0A0A6YYK1 113 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 SAA1P0DJI8 122 aaPredicted RBP9.07□□□□□ -0.96
CLN3-244ENST00000636147 S100A7AQ86SG5 101 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 OR10AG1Q8NH19 301 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 VSTM2AQ8TAG5 236 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 GPR82Q96P67 336 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 SLC25A33Q9BSK2 321 aa9.07□□□□□ -0.96
CLN3-244ENST00000636147 YPEL1O60688 119 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 DKK1O94907 266 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 KIR3DL3Q8N743 410 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 SMIM12Q96EX1 92 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 YPEL2Q96QA6 119 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 ZPBPQ9BS86 351 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 C19orf24Q9BVV8 132 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 PILRBQ9UKJ0 227 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 SYS1-DBNDD2H3BUS1 97 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 ITGB1BP1O14713 200 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 FABP2P12104 132 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 CDX2Q99626 313 aaPredicted RBP9.06□□□□□ -0.96
CLN3-244ENST00000636147 MRPL32Q9BYC8 188 aaKnown RBP9.06□□□□□ -0.96
CLN3-244ENST00000636147 ST20Q9HBF5 79 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 CHD9Q3L8U1 2897 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 ANKRD39Q53RE8 183 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 EBLN2Q6P2I7 272 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 BHLHA15Q7RTS1 189 aaPredicted RBP9.06□□□□□ -0.96
CLN3-244ENST00000636147 CHODLQ9H9P2 273 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 IDI2-AS1Q9NZ38 188 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 SPEGQ15772 3267 aa9.06□□□□□ -0.96
CLN3-244ENST00000636147 NDUFB3O43676 98 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 VDAC2P45880 294 aaPredicted RBP9.05□□□□□ -0.96
CLN3-244ENST00000636147 CD69Q07108 199 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 TMEM105Q8N8V8 129 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 AAMDCQ9H7C9 122 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 IGKV1-16P04430 117 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 C5orf30Q96GV9 206 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 TMUB1Q9BVT8 246 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 EPDR1Q9UM22 224 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 A1L4Q6 167 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 UPK2O00526 184 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 ZNF207O43670 478 aaKnown RBP9.05□□□□□ -0.96
CLN3-244ENST00000636147 GNG7O60262 68 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 PSG9Q00887 426 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 GCSAMQ8N6F7 178 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 RASL11BQ9BPW5 248 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 MRPL20Q9BYC9 149 aaKnown RBP9.05□□□□□ -0.96
CLN3-244ENST00000636147 MRPL27Q9P0M9 148 aaKnown RBP9.05□□□□□ -0.96
CLN3-244ENST00000636147 SPCS1Q9Y6A9 102 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 LY96Q9Y6Y9 160 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 S4R3C0 116 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 MALRD1Q5VYJ5 2156 aa9.05□□□□□ -0.96
CLN3-244ENST00000636147 ORM1P02763 201 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 DAZAP2Q15038 168 aaPredicted RBP9.04□□□□□ -0.96
CLN3-244ENST00000636147 Q6ZR03 302 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 RBPMS2Q6ZRY4 209 aaKnown RBP9.04□□□□□ -0.96
CLN3-244ENST00000636147 HIGD1AQ9Y241 93 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 KBTBD11-OT1A0A1B0GTJ5 212 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 CCL3L1P16619 93 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 CKS2P33552 79 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 ERVK11-1P61568 191 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 VWC2Q2TAL6 325 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 DEFB109BQ30KR1 87 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 TMEM97Q5BJF2 176 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 Q6ZT83 130 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 ZCCHC24Q8N2G6 241 aaKnown RBP9.04□□□□□ -0.96
CLN3-244ENST00000636147 IGHV2-26A0A0B4J1V2 119 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 AHRRA9YTQ3 701 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 ACP1P24666 158 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 ZNF134P52741 427 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 LINC00173Q6ZV60 143 aa9.04□□□□□ -0.96
CLN3-244ENST00000636147 A0A1B0GUT8 65 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 RPL27AP46776 148 aaKnown RBP9.03□□□□□ -0.96
CLN3-244ENST00000636147 PRCDQ00LT1 54 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 LRRC10Q5BKY1 277 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 CIARTQ8N365 385 aaPredicted RBP9.03□□□□□ -0.96
CLN3-244ENST00000636147 TMEM265A0A087WTH1 108 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 TNFRSF1AP19438 455 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 OR2K2Q8NGT1 345 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 M0R296 226 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 NDUFB8O95169 186 aa9.03□□□□□ -0.96
CLN3-244ENST00000636147 HIST1H1AQ02539 215 aaPredicted RBP9.03□□□□□ -0.96
CLN3-244ENST00000636147 TWIST1Q15672 202 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms