RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GSKIPQ9P0R6 139 aa15.62■□□□□ 0.09
CLN3-240ENST00000631023 OR10J1P30954 320 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 BMI1P35226 326 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 NRARPQ7Z6K4 114 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 Q8N1Y9 231 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 ZBTB8BQ8NAP8 495 aaPredicted RBP15.61■□□□□ 0.09
CLN3-240ENST00000631023 WDR89Q96FK6 387 aaPredicted RBP15.61■□□□□ 0.09
CLN3-240ENST00000631023 ACY3Q96HD9 319 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 ZNF414Q96IQ9 312 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 SMPXQ9UHP9 88 aa15.61■□□□□ 0.09
CLN3-240ENST00000631023 IGHV7-4-1A0A0J9YVY3 117 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 IGKV1-17P01599 117 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 IGLC1P0CG04 106 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 POLR2GP62487 172 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLN3-240ENST00000631023 TIGITQ495A1 244 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 SPANXN5Q5MJ07 72 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 SLC35E1Q96K37 410 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 STRAPQ9Y3F4 350 aaKnown RBP15.6■□□□□ 0.09
CLN3-240ENST00000631023 SELENOKQ9Y6D0 94 aa15.6■□□□□ 0.09
CLN3-240ENST00000631023 FAM25EA8MYX2 175 aa15.59■□□□□ 0.09
CLN3-240ENST00000631023 SCAF4O95104 1147 aaKnown RBP15.59■□□□□ 0.09
CLN3-240ENST00000631023 SCGB1D2O95969 90 aa15.59■□□□□ 0.09
CLN3-240ENST00000631023 YPEL3P61236 119 aaPredicted RBP15.59■□□□□ 0.09
CLN3-240ENST00000631023 Q8WTZ3 238 aa15.59■□□□□ 0.09
CLN3-240ENST00000631023 C5orf51A6NDU8 294 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 SSSCA1O60232 199 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 CD81P60033 236 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 RAB40CQ96S21 281 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 RHPN1-AS1Q9BWJ2 59 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 ZFAND3Q9H8U3 227 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 PSENENQ9NZ42 101 aa15.58■□□□□ 0.09
CLN3-240ENST00000631023 CCSO14618 274 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 CHEK1O14757 476 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 PRAF2O60831 178 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 NPPCP23582 126 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 GAMTQ14353 236 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 SMIM8Q96KF7 97 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 NEURL2Q9BR09 285 aa15.58■□□□□ 0.08
CLN3-240ENST00000631023 INMT-MINDY4F8WBC2 141 aa15.57■□□□□ 0.08
CLN3-240ENST00000631023 H3BP45 60 aa15.57■□□□□ 0.08
CLN3-240ENST00000631023 METTL26Q96S19 204 aa15.57■□□□□ 0.08
CLN3-240ENST00000631023 IGHV3-49A0A0A0MS15 119 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 A8MZ25 164 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 TSPAN4O14817 238 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 CD5P06127 495 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 NHLRC4P0CG21 123 aaPredicted RBP15.56■□□□□ 0.08
CLN3-240ENST00000631023 IGHV4-30-4P0DP06 118 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 GSG1LQ6UXU4 331 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 NARS2Q96I59 477 aaKnown RBP15.56■□□□□ 0.08
CLN3-240ENST00000631023 SPAG8Q99932 426 aaPredicted RBP15.56■□□□□ 0.08
CLN3-240ENST00000631023 MARVELD1Q9BSK0 173 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 TMEM231Q9H6L2 316 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 TUBA4BQ9H853 241 aa15.56■□□□□ 0.08
CLN3-240ENST00000631023 A0A1W2PS18 150 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 ZFP92A6NM28 416 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 SNRPGP15A8MWD9 76 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 FABP1P07148 127 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 FRMD6-AS1P0C7T7 363 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 RD3LP0DJH9 198 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 TAS2R30P59541 319 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 C2orf50Q96LR7 162 aa15.55■□□□□ 0.08
CLN3-240ENST00000631023 COL7A1Q02388 2944 aa15.54■□□□□ 0.08
CLN3-240ENST00000631023 TOMM40O96008 361 aa15.54■□□□□ 0.08
CLN3-240ENST00000631023 MBPP02686 304 aaPredicted RBP15.54■□□□□ 0.08
CLN3-240ENST00000631023 CD7P09564 240 aa15.54■□□□□ 0.08
CLN3-240ENST00000631023 RNF2Q99496 336 aa15.54■□□□□ 0.08
CLN3-240ENST00000631023 IGHV3OR16-13A0A075B7E8 117 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 IGHV3-74A0A0B4J1X5 117 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 TSC22D2O75157 780 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 VSIRQ9H7M9 311 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 OR11H12B2RN74 326 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 L7N2F9 121 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 CRYBB3P26998 211 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 VAMP2P63027 116 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 ST8SIA2Q92186 375 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 C19orf73Q9NVV2 129 aa15.53■□□□□ 0.08
CLN3-240ENST00000631023 RCL1Q9Y2P8 373 aaKnown RBP15.53■□□□□ 0.08
CLN3-240ENST00000631023 OR4C46A6NHA9 309 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 PRSS46E5RG02 174 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 IL4P05112 153 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 PSG1P11464 419 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 PAX9P55771 341 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 OR51G1Q8NGK1 321 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 ASCL2Q99929 193 aa15.52■□□□□ 0.07
CLN3-240ENST00000631023 APOHP02749 345 aaPredicted RBP15.51■□□□□ 0.07
CLN3-240ENST00000631023 PAFAH1B2P68402 229 aa15.51■□□□□ 0.07
CLN3-240ENST00000631023 OR8G2PQ6IF36 304 aa15.51■□□□□ 0.07
CLN3-240ENST00000631023 TCF24Q7RTU0 167 aa15.51■□□□□ 0.07
CLN3-240ENST00000631023 GRAMD2BQ96HH9 432 aa15.51■□□□□ 0.07
CLN3-240ENST00000631023 TRGV9Q99603 122 aa15.51■□□□□ 0.07
CLN3-240ENST00000631023 LSM5Q9Y4Y9 91 aaKnown RBP15.51■□□□□ 0.07
CLN3-240ENST00000631023 C7orf66A4D0T2 115 aa15.5■□□□□ 0.07
CLN3-240ENST00000631023 HNRNPCP07910 306 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN3-240ENST00000631023 PVALBP20472 110 aaPredicted RBP15.5■□□□□ 0.07
CLN3-240ENST00000631023 FAM90A2PQ658T7 463 aa15.5■□□□□ 0.07
CLN3-240ENST00000631023 TMEM14EPQ6UXP3 125 aa15.5■□□□□ 0.07
CLN3-240ENST00000631023 THAP8Q8NA92 274 aa15.5■□□□□ 0.07
CLN3-240ENST00000631023 IGKV1D-37A0A075B6S9 117 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 IGHV3-66A0A0C4DH42 116 aa15.49■□□□□ 0.07
CLN3-240ENST00000631023 K7EPK0 472 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 254.3 ms