RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 COMMD3Q9UBI1 195 aa6.17□□□□□ -1.42
SHKBP1-220ENST00000599716 A0A1W2PS18 150 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 FAM90A26D6RGX4 464 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 IFNA10P01566 189 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 CD5P06127 495 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 RND2P52198 227 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 DHODHQ02127 395 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 OR4X1Q8NH49 305 aa6.16□□□□□ -1.42
SHKBP1-220ENST00000599716 H3BMM0 161 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 HPGDSO60760 199 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 PRM2P04554 102 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 IL4P05112 153 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 IGLC1P0CG04 106 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 S100GP29377 79 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 PIGPP57054 158 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 TRIM16LQ309B1 348 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 C16orf54Q6UWD8 224 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 Q6ZR54 194 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 OR4D10Q8NGI6 311 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 TMEM170AQ8WVE7 144 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 U3KQE9 123 aa6.15□□□□□ -1.42
SHKBP1-220ENST00000599716 C3orf85A0A1B0GTC6 90 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 F6UB75 175 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 ATP6V1G2O95670 118 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 IFNA21P01568 189 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 CD74P04233 296 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 CD3DP04234 171 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 HNRNPCP07910 306 aaKnown RBP eCLIP6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 PRB4P10163 310 aaPredicted RBP6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 ELK1P19419 428 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 OR10J1P30954 320 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 UCP3P55916 312 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 NCS1P62166 190 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 TNP2Q05952 138 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 MEF2DQ14814 521 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 LGALS9BQ3B8N2 356 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 BSXQ3C1V8 233 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 TMEM41BQ5BJD5 291 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM222AQ5U5X8 452 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 FAAP20Q6NZ36 180 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 LPCAT3Q6P1A2 487 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 PRSS54Q6PEW0 395 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 RNASE11Q8TAA1 199 aaKnown RBP6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 LHFPL5Q8TAF8 219 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 ACY3Q96HD9 319 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 NARS2Q96I59 477 aaKnown RBP6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 LINC00052Q96N35 136 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 PDCD10Q9BUL8 212 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 WDR12Q9GZL7 423 aaKnown RBP6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 SLC35B3Q9H1N7 401 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 ENY2Q9NPA8 101 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 SCRT2Q9NQ03 307 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 PRR13Q9NZ81 148 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 KLK11Q9UBX7 282 aa6.14□□□□□ -1.43
SHKBP1-220ENST00000599716 INS-IGF2F8WCM5 200 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 CORTO00230 105 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 SPART-AS1P0CW21 52 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 HLA-DRB4P13762 266 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 NPY1RP25929 384 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 RCVRNP35243 200 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 SUB1P53999 127 aaKnown RBP eCLIP6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 RND3P61587 244 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 TMEM88Q6PEY1 159 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 SIGLEC15Q6ZMC9 328 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF705AQ6ZN79 300 aaPredicted RBP6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 LHFPL1Q86WI0 220 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 OR4B1Q8NGF8 309 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 OR51G1Q8NGK1 321 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 OR13C8Q8NGS7 320 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 OR52I2Q8NH67 350 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 MARCH1Q8TCQ1 289 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 Q8WTZ3 238 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 NPIPB3Q92617 1050 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 YIPF6Q96EC8 236 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 PBDC1Q9BVG4 233 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 NRN1Q9NPD7 142 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 HEYLQ9NQ87 328 aaPredicted RBP6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 FAM212BQ9NTI7 297 aaPredicted RBP6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 DKK2Q9UBU2 259 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 HLA-DRB4X5D2U9 266 aa6.13□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF705FA8MVS1 300 aaPredicted RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 BUB3O43684 328 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 OR5AC1P0C628 307 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF705DP0CH99 300 aaPredicted RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF705BP0CI00 300 aaPredicted RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 PSG1P11464 419 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 RPL5P46777 297 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 VBP1P61758 197 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 SNRPD3P62318 126 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 SCGB2B2Q4G0G5 96 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 RNASE10Q5GAN6 216 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 C1orf158Q8N1D5 194 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 ZNF709Q8N972 641 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 OR1S2Q8NGQ3 325 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 GPR146Q96CH1 333 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 RRNAD1Q96FB5 475 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 NIPSNAP3BQ9BS92 247 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 YTHDF1Q9BYJ9 559 aaKnown RBP6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 COPZ2Q9P299 210 aa6.12□□□□□ -1.43
SHKBP1-220ENST00000599716 CACNG5Q9UF02 275 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms