RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RSG1Q9BU20 258 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 GGTLC1Q9BX51 225 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 MRPL36Q9P0J6 103 aaKnown RBP12.04□□□□□ -0.48
UPF1-206ENST00000598471 UBQLN2Q9UHD9 624 aa12.04□□□□□ -0.48
UPF1-206ENST00000598471 TCRBV4S1A1TA0A5B7 111 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 CFDP00746 253 aaPredicted RBP12.03□□□□□ -0.48
UPF1-206ENST00000598471 SERF2P84101 59 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 CYP2G1PQ6ZSU1 146 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 OR4X2Q8NGF9 303 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 ZNF502Q8TBZ5 544 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 SH3BGRL3Q9H299 93 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 S4R3C0 116 aa12.03□□□□□ -0.48
UPF1-206ENST00000598471 UMAD1C9J7I0 102 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 TSPAN15O95858 294 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 MBP02144 154 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 IGLC1P0CG04 106 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 RPL29P47914 159 aaKnown RBP12.02□□□□□ -0.49
UPF1-206ENST00000598471 SRSF2Q01130 221 aaKnown RBP12.02□□□□□ -0.49
UPF1-206ENST00000598471 IFITM2Q01629 132 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 AKR1C8PQ5T2L2 129 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 KLHDC1Q8N7A1 406 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 KLK15Q9H2R5 256 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 PXMP4Q9Y6I8 212 aa12.02□□□□□ -0.49
UPF1-206ENST00000598471 IGKV1OR2-108A0A075B7D4 117 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 NUPL2O15504 423 aaKnown RBP12.01□□□□□ -0.49
UPF1-206ENST00000598471 IGHV3-23P01764 117 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 RAB5CP51148 216 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 B2MP61769 119 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 FFAR4Q5NUL3 377 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 TMEM182Q6ZP80 229 aaPredicted RBP12.01□□□□□ -0.49
UPF1-206ENST00000598471 RNF152Q8N8N0 203 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 BPIFCQ8NFQ6 507 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 OR5AU1Q8NGC0 362 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 LINC01006Q8NI28 216 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 SLC45A2Q9UMX9 530 aa12.01□□□□□ -0.49
UPF1-206ENST00000598471 SETD2Q9BYW2 2564 aaPredicted RBP12.01□□□□□ -0.49
UPF1-206ENST00000598471 NIPBLQ6KC79 2804 aaeCLIP12.01□□□□□ -0.49
UPF1-206ENST00000598471 CUBNO60494 3623 aa12□□□□□ -0.49
UPF1-206ENST00000598471 IGKV1D-37A0A075B6S9 117 aa12□□□□□ -0.49
UPF1-206ENST00000598471 A0A1B0GUS0 222 aa12□□□□□ -0.49
UPF1-206ENST00000598471 OR2T8A6NH00 312 aa12□□□□□ -0.49
UPF1-206ENST00000598471 RGS13O14921 159 aa12□□□□□ -0.49
UPF1-206ENST00000598471 GPR183P32249 361 aa12□□□□□ -0.49
UPF1-206ENST00000598471 ELLP55199 621 aaPredicted RBP12□□□□□ -0.49
UPF1-206ENST00000598471 ZNF616Q08AN1 781 aa12□□□□□ -0.49
UPF1-206ENST00000598471 ACOT6Q3I5F7 207 aaPredicted RBP12□□□□□ -0.49
UPF1-206ENST00000598471 TIGITQ495A1 244 aa12□□□□□ -0.49
UPF1-206ENST00000598471 MIC13Q5XKP0 118 aa12□□□□□ -0.49
UPF1-206ENST00000598471 SPSB3Q6PJ21 355 aa12□□□□□ -0.49
UPF1-206ENST00000598471 Q6ZRG5 221 aa12□□□□□ -0.49
UPF1-206ENST00000598471 STPG3Q8N7X2 389 aa12□□□□□ -0.49
UPF1-206ENST00000598471 LRRC20Q8TCA0 184 aa12□□□□□ -0.49
UPF1-206ENST00000598471 RNF141Q8WVD5 230 aa12□□□□□ -0.49
UPF1-206ENST00000598471 SLC39A9Q9NUM3 307 aa12□□□□□ -0.49
UPF1-206ENST00000598471 CLPSL1A2RUU4 121 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 TGOLN2O43493 480 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 RPLP1P05386 114 aaKnown RBP11.99□□□□□ -0.49
UPF1-206ENST00000598471 SULT1A2P50226 295 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 RAB14P61106 215 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 YPEL3P61236 119 aaPredicted RBP11.99□□□□□ -0.49
UPF1-206ENST00000598471 TMEM41BQ5BJD5 291 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 FAM74A1Q5RGS3 127 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 C10orf99Q6UWK7 81 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 CLEC19AQ6UXS0 136 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 LCNL1Q6ZST4 164 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 MYOZ3Q8TDC0 251 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 CCDC140Q96MF4 163 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 RNF114Q9Y508 228 aa11.99□□□□□ -0.49
UPF1-206ENST00000598471 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.98□□□□□ -0.49
UPF1-206ENST00000598471 F8W735 103 aaPredicted RBP11.98□□□□□ -0.49
UPF1-206ENST00000598471 TOMM40O96008 361 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 IGKV1-17P01599 117 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 IGHV3-11P01762 117 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 CLEC3BP05452 202 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 LINC00869P0C866 280 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 RD3LP0DJH9 198 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 PRR20EP86478 221 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 PRR20CP86479 221 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 PRR20DP86480 221 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 PRR20BP86481 221 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 PRR20AP86496 221 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 ZNF90Q03938 601 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 RELQ04864 619 aaPredicted RBP11.98□□□□□ -0.49
UPF1-206ENST00000598471 PXDC1Q5TGL8 231 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 ZNF343Q6P1L6 599 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 DPPA3Q6W0C5 159 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 ZNF491Q8N8L2 437 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 OR1L4Q8NGR5 311 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 Q8WTZ3 238 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 UBE2E2Q96LR5 201 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 GNB4Q9HAV0 340 aa11.98□□□□□ -0.49
UPF1-206ENST00000598471 CTSGP08311 255 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 M6PRP20645 277 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 ARL3P36405 182 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 ZNF600Q6ZNG1 722 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 OR51G1Q8NGK1 321 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 PFDN5Q99471 154 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 C19orf24Q9BVV8 132 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 RFNGQ9Y644 331 aa11.97□□□□□ -0.49
UPF1-206ENST00000598471 C2CD3Q4AC94 2353 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms