RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 SLC25A4P12235 298 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 RPP30P78346 268 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 ASAH1Q13510 395 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 TM4SF20Q53R12 229 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 OR4X1Q8NH49 305 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 CIB3Q96Q77 187 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 C20orf24Q9BUV8 137 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 GGTLC1Q9BX51 225 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 DAZ1Q9NQZ3 744 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 MLXQ9UH92 298 aa13.1□□□□□ -0.31
SHKBP1-203ENST00000594298 CLN5O75503 358 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 YIF1AO95070 293 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 H2AFB2P0C5Z0 115 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 C8orf88P0DMB2 117 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 OR52B4Q8NGK2 314 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 MITD1Q8WV92 249 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 OVOL2Q9BRP0 275 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 NUDT15Q9NV35 164 aa13.09□□□□□ -0.31
SHKBP1-203ENST00000594298 TRAV6A0A075B6T7 132 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 LOC102724200A0A096LPH7 203 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 C15orf62A8K5M9 175 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 IFNA4P05014 189 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 RAB11AP62491 216 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 ZNF600Q6ZNG1 722 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 LINC00476Q8WZB0 136 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 GINS3Q9BRX5 216 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 FNDC4Q9H6D8 234 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 TBC1D24Q9ULP9 559 aa13.08□□□□□ -0.32
SHKBP1-203ENST00000594298 TRAV25A0A0B4J276 109 aa13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 SYNGR2O43760 224 aa13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 ADAP1O75689 374 aa13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 MLANAQ16655 118 aa13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 RBPMS2Q6ZRY4 209 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 ENKURQ8TC29 256 aa13.07□□□□□ -0.32
SHKBP1-203ENST00000594298 WRBO00258 174 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 SCAF4O95104 1147 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 BMI1P35226 326 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 DEFA1P59665 94 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 DEFA3P59666 94 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 LAMTOR1Q6IAA8 161 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 BTNL8Q6UX41 500 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 WFDC3Q8IUB2 231 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 OR1S2Q8NGQ3 325 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 ZNF431Q8TF32 576 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 SELENOKQ9Y6D0 94 aa13.06□□□□□ -0.32
SHKBP1-203ENST00000594298 TRAV14DV4A0A0A6YYC5 116 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 IAPPP10997 89 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 GPX4P36969 197 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 NKX2-1P43699 371 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 ID3Q02535 119 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 PRSS54Q6PEW0 395 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 TMEM116Q8NCL8 245 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 TMEM170AQ8WVE7 144 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 OR10C1Q96KK4 312 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 MAGT1Q9H0U3 335 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 TP53TG1Q9Y2A0 90 aa13.05□□□□□ -0.32
SHKBP1-203ENST00000594298 RND2P52198 227 aa13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 IAH1Q2TAA2 248 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 TOMM20LQ6UXN7 152 aa13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 SLC35E1Q96K37 410 aa13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 SMPXQ9UHP9 88 aa13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 PAIP2BQ9ULR5 123 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 PUS1Q9Y606 427 aaKnown RBP eCLIP13.04□□□□□ -0.32
SHKBP1-203ENST00000594298 IGHV3OR16-8A0A075B7F1 116 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 IGHV7-4-1A0A0J9YVY3 117 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 NUPR2A6NF83 97 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 ZNF207O43670 478 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 IL5P05113 134 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 OR10J1P30954 320 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 Q6ZWC4 215 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 C12orf45Q8N5I9 185 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 OR4D5Q8NGN0 318 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 Q8WTZ3 238 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 ACY3Q96HD9 319 aa13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 GPN1Q9HCN4 374 aaPredicted RBP13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 MRPL36Q9P0J6 103 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-203ENST00000594298 CD5P06127 495 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 ATF4P18848 351 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 YPEL3P61236 119 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 IFITM3Q01628 133 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 TIGITQ495A1 244 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 ZBTB8BQ8NAP8 495 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 NPIPB3Q92617 1050 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 SPAG8Q99932 426 aaPredicted RBP13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 SEC22CQ9BRL7 303 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 RHPN1-AS1Q9BWJ2 59 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 TMEM231Q9H6L2 316 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 GSKIPQ9P0R6 139 aa13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 STRAPQ9Y3F4 350 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-203ENST00000594298 A0A0J9YWU9 116 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 A0A1W2PS18 150 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 CXorf65A6NEN9 183 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 MPTX1A8MV57 137 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 LY6G6CO95867 125 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 IGKV1-17P01599 117 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 IGLC1P0CG04 106 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 NPPCP23582 126 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 APOC4P55056 127 aa13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 POLR2GP62487 172 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHKBP1-203ENST00000594298 SPANXN5Q5MJ07 72 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms