RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	NOTO	A8MTQ0	251 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488		M0QYG6	137 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	CORT	O00230	105 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	IGKV1-17	P01599	117 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	RFX2	P48378	723 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	PHLDA2	Q53GA4	152 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	SEC22A	Q96IW7	307 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	SAV1	Q9H4B6	383 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	PGPEP1	Q9NXJ5	209 aa		11.28	□□□□□ -0.6
CLK3-223	ENST00000568488	TRAV30	A0A087WSZ9	112 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	TRDV1	A0A1B0GX56	115 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	GPR31	O00270	319 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	PSG9	Q00887	426 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	DHODH	Q02127	395 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	USF2	Q15853	346 aa	Predicted RBP	11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	IZUMO4	Q1ZYL8	232 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	SLC35G3	Q8N808	338 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	RNF141	Q8WVD5	230 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	MRGPRF	Q96AM1	343 aa		11.27	□□□□□ -0.61
CLK3-223	ENST00000568488	LYRM9	A8MSI8	78 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	IGKV1-39	P01597	117 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	IGKV1D-39	P04432	117 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	PRM2	P04554	102 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	RNASE2	P10153	161 aa	Known RBP	11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	DHRS11	Q6UWP2	260 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	FOXI2	Q6ZQN5	318 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	UHRF2	Q96PU4	802 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488		Q9H3A6	140 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	DUSP21	Q9H596	190 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	IFT46	Q9NQC8	304 aa		11.26	□□□□□ -0.61
CLK3-223	ENST00000568488	ZNF705G	A8MUZ8	300 aa	Predicted RBP	11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	FAM229A	H3BQW9	127 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	PMP2	P02689	132 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	IL4	P05112	153 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	CBX5	P45973	191 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	RORC	P51449	518 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	FCN2	Q15485	313 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	OR6F1	Q8NGZ6	308 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	COQ8A	Q8NI60	647 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	SCPEP1	Q9HB40	452 aa		11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	RRP15	Q9Y3B9	282 aa	Known RBP	11.25	□□□□□ -0.61
CLK3-223	ENST00000568488	EREG	O14944	169 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	BUB3	O43684	328 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	ATP5G1	P05496	136 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	S100G	P29377	79 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	ID1	P41134	155 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	ETV6	P41212	452 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	ATP5G3	P48201	142 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	EBLN2	Q6P2I7	272 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	TBC1D26	Q86UD7	250 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	C17orf77	Q96MU5	243 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	CLUHP3	Q96NS8	147 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	PDCD10	Q9BUL8	212 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	FXYD6	Q9H0Q3	95 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	AUNIP	Q9H7T9	357 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488	ZNF586	Q9NXT0	402 aa		11.24	□□□□□ -0.61
CLK3-223	ENST00000568488		F6UB75	175 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	IFNA5	P01569	189 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	ZNF79	Q15937	498 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	FAM78B	Q5VT40	261 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	PRSS48	Q7RTY5	328 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	OR1S2	Q8NGQ3	325 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	OR5H6	Q8NGV6	325 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	WDR12	Q9GZL7	423 aa	Known RBP	11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	ENY2	Q9NPA8	101 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	NDUFB11	Q9NX14	153 aa		11.23	□□□□□ -0.61
CLK3-223	ENST00000568488	HMCN2	Q8NDA2	5059 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	GSTZ1	O43708	216 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	IGLC1	P0CG04	106 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	OR10J1	P30954	320 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	RPL5	P46777	297 aa	Known RBP	11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	SFXN4	Q6P4A7	337 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	OR4C16	Q8NGL9	310 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	DIABLO	Q9NR28	239 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	FAM212B	Q9NTI7	297 aa	Predicted RBP	11.22	□□□□□ -0.61
CLK3-223	ENST00000568488	KLK11	Q9UBX7	282 aa		11.22	□□□□□ -0.61
CLK3-223	ENST00000568488		A0A1W2PPQ1	181 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	CBY3	A6NI87	242 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	INS-IGF2	F8WCM5	200 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	RND2	P52198	227 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	KRTAP10-1	P60331	282 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	YPEL3	P61236	119 aa	Predicted RBP	11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	SPATA31B1P	Q5VZV4	182 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	OR5H2	Q8NGV7	314 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	SLC25A38	Q96DW6	304 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488	IGF2BP2-AS1	Q96M15	143 aa		11.21	□□□□□ -0.61
CLK3-223	ENST00000568488		A0A0B4J293	547 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488	PSMB3	P49720	205 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488	LINC00315	P59091	139 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488	TAS2R20	P59543	309 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488	ICAM4	Q14773	271 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488		Q6ZSN1	163 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488	ABHD1	Q96SE0	405 aa		11.2	□□□□□ -0.62
CLK3-223	ENST00000568488		A0A0A6YYH2	397 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488		A6NJ64	397 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	RD3L	P0DJH9	198 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	OR5I1	Q13606	314 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	CDPF1	Q6NVV7	123 aa		11.19	□□□□□ -0.62
CLK3-223	ENST00000568488	LPCAT3	Q6P1A2	487 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms