RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ZNF331Q9NQX6 463 aaPredicted RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DAZ1Q9NQZ3 744 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DAZ3Q9NR90 486 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 PLSCR3Q9NRY6 295 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 RFNGQ9Y644 331 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 PXMP4Q9Y6I8 212 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DCHS1Q96JQ0 3298 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 MYO7BQ6PIF6 2116 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 NKX2-6A6NCS4 301 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 SHISA9B4DS77 424 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 DNASE2O00115 360 aaPredicted RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 LMX1BO60663 402 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 IGKV3-15P01624 115 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 IGLV2-8P01709 118 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 MEOX2P50222 304 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 SNRPGP62308 76 aaKnown RBP3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 BAMBIQ13145 260 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 BTN1A1Q13410 526 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 KRTAP27-1Q3LI81 207 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 UBE2NLQ5JXB2 153 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 NCMAPQ5T1S8 102 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 AKR1C8PQ5T2L2 129 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF773Q6PK81 442 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 MOB1BQ7L9L4 216 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 LINC00596Q86U02 117 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 C10orf111Q8N326 155 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 YIPF7Q8N8F6 280 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 LY6G5BQ8NDX9 201 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 OR11H6Q8NGC7 330 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 THEM6Q8WUY1 208 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 Q96M85 177 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 NMNAT3Q96T66 252 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 VPS25Q9BRG1 176 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF649Q9BS31 505 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM147Q9BVK8 224 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CBLN4Q9NTU7 201 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 CKLFQ9UBR5 152 aa3.8□□□□□ -1.8
VPS35P1-201ENST00000563400 TNRC6AQ8NDV7 1962 aaKnown RBP3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 SLC17A3O00476 420 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 SOCS3O14543 225 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 CD5LO43866 347 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 HTR1AP08908 422 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 CDKN2AP42771 156 aaKnown RBP3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 KLF3P57682 345 aaPredicted RBP3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ELF3P78545 371 aaPredicted RBP3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 SSX1Q16384 188 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ORMDL2Q53FV1 153 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 TCTEX1D4Q5JR98 221 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM244Q5VVB8 128 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 TOMM20LQ6UXN7 152 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ANGPTL5Q86XS5 388 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ACBD7Q8N6N7 88 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF283Q8N7M2 679 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 OR4D11Q8NGI4 311 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 OR10G4Q8NGN3 311 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 S100A13Q99584 98 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 TIMM17AQ99595 171 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 TMEM204Q9BSN7 226 aa3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 LYRM2Q9NU23 88 aaPredicted RBP3.79□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF407Q9C0G0 2248 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 GGT3PA6NGU5 568 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF705GA8MUZ8 300 aaPredicted RBP3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 KRBOX1C9JBD0 128 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 K7EP13 123 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 M0R233 179 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 CDC42EP2O14613 210 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 BET1O15155 118 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 TCF21O43680 179 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ANGPTL7O43827 346 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 COX7A2P2O60397 106 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 GABARAPO95166 117 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 SOD3P08294 240 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 SPI1P17947 270 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ORM2P19652 201 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 DAPP51397 102 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF83P51522 516 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 HERVK_113P61574 105 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF876PQ49A33 203 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 PABPC1L2AQ5JQF8 200 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 CASC10Q5T4H9 136 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ZNF497Q6ZNH5 498 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ANKRD29Q8N6D5 301 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 LINC01560Q8TB33 94 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 C7orf33Q8WU49 177 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 PTX4Q96A99 478 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 TSPAN32Q96QS1 320 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 CCL19Q99731 98 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 C2orf88Q9BSF0 95 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 OR2H1Q9GZK4 316 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 CA10Q9NS85 328 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 LINC00527Q9UJ94 153 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 ANAPC10Q9UM13 185 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 SSR3Q9UNL2 185 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 PIEZO2Q9H5I5 2752 aa3.78□□□□□ -1.8
VPS35P1-201ENST00000563400 EXPH5Q8NEV8 1989 aa3.77□□□□□ -1.81
VPS35P1-201ENST00000563400 A0A087WX48 190 aa3.77□□□□□ -1.81
VPS35P1-201ENST00000563400 TMEM269A0A1B0GVZ9 245 aa3.77□□□□□ -1.81
VPS35P1-201ENST00000563400 KNCNA6PVL3 124 aa3.77□□□□□ -1.81
VPS35P1-201ENST00000563400 K7EPK0 472 aa3.77□□□□□ -1.81
VPS35P1-201ENST00000563400 M0R135 149 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms