RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 COL6A5A8TX70 2615 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 F8W735 103 aaPredicted RBP7.42□□□□□ -1.22
CUX1-216ENST00000558469 GNG7O60262 68 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 CLN5O75503 358 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 TRBV12-3P01733 135 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 ARL3P36405 182 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 ATP6V1FQ16864 119 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 DEFB136Q30KP8 78 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 C8orf86Q6ZUL3 223 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 NDUFA11Q86Y39 141 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 TMEM116Q8NCL8 245 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 MDFIQ99750 246 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 ZNF747Q9BV97 191 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 NPVFQ9HCQ7 196 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 UQCC1Q9NVA1 299 aa7.42□□□□□ -1.22
CUX1-216ENST00000558469 WNK1Q9H4A3 2382 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 A0A0D9SG52 128 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 UBE2L5PA0A1B0GUS4 154 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 ADARB2-AS1A8MUL3 147 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 FNDC10F2Z333 226 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 TGOLN2O43493 480 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 CTSGP08311 255 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 CXCL2P19875 107 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 OR10J1P30954 320 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 FCGR2BP31994 310 aaPredicted RBP7.41□□□□□ -1.22
CUX1-216ENST00000558469 RUNX1Q01196 453 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 OR2F1Q13607 317 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 ZNF345Q14585 488 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 TIGITQ495A1 244 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 FAM209BQ5JX69 171 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 TMEM144Q7Z5S9 345 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 DUX3Q96PT4 197 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 ATP6V0BQ99437 205 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 ATP5SQ99766 215 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 CHRDL1Q9BU40 450 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 TMEM147Q9BVK8 224 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 WFDC1Q9HC57 220 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 GAR1Q9NY12 217 aaKnown RBP7.41□□□□□ -1.22
CUX1-216ENST00000558469 FBXL17Q9UF56 701 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 STAB1Q9NY15 2570 aa7.41□□□□□ -1.22
CUX1-216ENST00000558469 IGHV4OR15-8A0A075B7B6 117 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 IGKV1OR2-108A0A075B7D4 117 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 TRAV30A0A087WSZ9 112 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 A0A087WW49 117 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 IGHV3-35A0A0C4DH35 117 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 ZFP92A6NM28 416 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 BMPR1BO00238 502 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 NUPL2O15504 423 aaKnown RBP7.4□□□□□ -1.22
CUX1-216ENST00000558469 SCGB2A1O75556 95 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 DFFBO76075 338 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 HSPB1P04792 205 aaKnown RBP7.4□□□□□ -1.22
CUX1-216ENST00000558469 IGLC1P0CG04 106 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 ADMP35318 185 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 NKX2-5P52952 324 aaPredicted RBP7.4□□□□□ -1.22
CUX1-216ENST00000558469 VWC2Q2TAL6 325 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 LGALSLQ3ZCW2 172 aaPredicted RBP7.4□□□□□ -1.22
CUX1-216ENST00000558469 SPSB3Q6PJ21 355 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 TEPPQ6URK8 271 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 TMUB2Q71RG4 321 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 KCNRGQ8N5I3 272 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 OR11H1Q8NG94 326 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 OR1N2Q8NGR9 330 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 RAX2Q96IS3 184 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 ARL6Q9H0F7 186 aa7.4□□□□□ -1.22
CUX1-216ENST00000558469 IGKV1D-37A0A075B6S9 117 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 LINC01619G3V211 115 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 BOLA2-SMG1P6H3BVE0 249 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 GGCTO75223 188 aaKnown RBP7.39□□□□□ -1.23
CUX1-216ENST00000558469 OR2C1O95371 312 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 IFNA5P01569 189 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 IGKV1-17P01599 117 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 FGF7P21781 194 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 ZNF90Q03938 601 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 ZNF616Q08AN1 781 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 RPEL1Q2QD12 228 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 SHISA2Q6UWI4 295 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 BTNL8Q6UX41 500 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 THAP8Q8NA92 274 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 SCGB1C1Q8TD33 95 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 DPF1Q92782 380 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 TRGV9Q99603 122 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 ARPC5LQ9BPX5 153 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 WDR83OSQ9Y284 106 aa7.39□□□□□ -1.23
CUX1-216ENST00000558469 LSM4Q9Y4Z0 139 aaKnown RBP7.39□□□□□ -1.23
CUX1-216ENST00000558469 BORCS7-ASMTA0A0B4J1R7 106 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 KANTRA0A1W2PQU2 76 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 CCL24O00175 119 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 TAAR5O14804 337 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 AGPAT2O15120 278 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 HNRNPCP07910 306 aaKnown RBP eCLIP7.38□□□□□ -1.237e-7■■□□□ 13.7
CUX1-216ENST00000558469 HOXD3P31249 432 aaPredicted RBP7.38□□□□□ -1.23
CUX1-216ENST00000558469 CAMLGP49069 296 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 SLURP1P55000 103 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 YPEL3P61236 119 aaPredicted RBP7.38□□□□□ -1.23
CUX1-216ENST00000558469 RELQ04864 619 aaPredicted RBP7.38□□□□□ -1.23
CUX1-216ENST00000558469 RAB31Q13636 194 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 ZNF266Q14584 549 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 RPL7L1Q6DKI1 246 aaKnown RBP7.38□□□□□ -1.23
CUX1-216ENST00000558469 LAMTOR1Q6IAA8 161 aa7.38□□□□□ -1.23
CUX1-216ENST00000558469 CYP2G1PQ6ZSU1 146 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms