RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 APOC4P55056 127 aa7.29□□□□□ -1.24
VPS13D-212ENST00000543766 RPS28P62857 69 aaKnown RBP7.29□□□□□ -1.24
VPS13D-212ENST00000543766 PRDX1Q06830 199 aaKnown RBP7.29□□□□□ -1.24
VPS13D-212ENST00000543766 Q499Y3 187 aa7.29□□□□□ -1.24
VPS13D-212ENST00000543766 NUS1Q96E22 293 aa7.29□□□□□ -1.24
VPS13D-212ENST00000543766 NHP2Q9NX24 153 aaKnown RBP7.29□□□□□ -1.24
VPS13D-212ENST00000543766 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-212ENST00000543766 TCRAP04437 139 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 PRSS41Q7RTY9 318 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 TRAV18A0A075B6X5 111 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 TMED7-TICAM2A0A0A6YYA0 188 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 FAM181BA6NEQ2 426 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 ZNF688P0C7X2 276 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 C15orf53Q8NAA6 179 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 LY6G5BQ8NDX9 201 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 PYGO2Q9BRQ0 406 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 COMMD5Q9GZQ3 224 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 PRDM6Q9NQX0 595 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 hADV29S1A0JD25 119 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 CIRBPQ14011 172 aaKnown RBP7.28□□□□□ -1.24
VPS13D-212ENST00000543766 VMA21Q3ZAQ7 101 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-212ENST00000543766 TMEM230Q96A57 120 aa7.28□□□□□ -1.24
VPS13D-212ENST00000543766 LOC107984156A0A0G2JMH3 177 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 SNURFLB1AK76 121 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 IGHV3-7P01780 117 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 CD7P09564 240 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 TEX36Q5VZQ5 186 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 ARL17AQ8IVW1 177 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 MCHR1Q99705 422 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 TM2D1Q9BX74 207 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 K7ERJ3 54 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 ZNF324O75467 553 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-212ENST00000543766 CELA2AP08217 269 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 SRD5A1P18405 259 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 POU3F1Q03052 451 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-212ENST00000543766 C3orf22Q8N5N4 141 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 PPDPFLQ8WWR9 84 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 TTTY10Q9BZA0 68 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 SDF2L1Q9HCN8 221 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 PRR13Q9NZ81 148 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 OBSL1O75147 1896 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 TRAV27A0A087WT01 109 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 C15orf65H3BRN8 121 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 BCL3P20749 454 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 ATP5G3P48201 142 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 CLDN17P56750 224 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 KLF5Q13887 457 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-212ENST00000543766 OR8B2Q96RD0 313 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 DLL3Q9NYJ7 618 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 ANAPC10Q9UM13 185 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 CFAP54Q96N23 3096 aa7.27□□□□□ -1.25
VPS13D-212ENST00000543766 SPINT3P49223 89 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 ZNF627Q7L945 461 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 C6orf201Q7Z4U5 140 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 K7N7A8 449 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 TMEM200BQ69YZ2 307 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 LYPD6Q86Y78 171 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 PFN4Q8NHR9 129 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 CHCHD2Q9Y6H1 151 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-212ENST00000543766 REV3LO60673 3130 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 ESPL1Q14674 2120 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 A1L4Q6 167 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 PAX4O43316 350 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 SUPT4H1P63272 117 aaKnown RBP7.26□□□□□ -1.25
VPS13D-212ENST00000543766 EFEMP1Q12805 493 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 ICAM4Q14773 271 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 GLIPR2Q9H4G4 154 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 C5orf66Q9H5L9 145 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 WDR83OSQ9Y284 106 aa7.26□□□□□ -1.25
VPS13D-212ENST00000543766 OVOL1O14753 267 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 TRIOO75962 3097 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 IGF1P05019 195 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRR20EP86478 221 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRR20CP86479 221 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRR20DP86480 221 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRR20BP86481 221 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRR20AP86496 221 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 HLA-DQA1Q5Y7H0 255 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 C18orf32Q8TCD1 76 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 Q96M85 177 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 MLST8Q9BVC4 326 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PRO3102Q9H379 93 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 TRPM6Q9BX84 2022 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 FRG2CA6NGY1 282 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 BUB3O43684 328 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 DUSP14O95147 198 aaKnown RBP7.25□□□□□ -1.25
VPS13D-212ENST00000543766 GYPBP06028 91 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 SGSHP51688 502 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 GCSAMQ8N6F7 178 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 OTOSQ8NHW6 89 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 DPH3Q96FX2 82 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 C2orf50Q96LR7 162 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 GNB4Q9HAV0 340 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PXMP4Q9Y6I8 212 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 LGALS1P09382 135 aaKnown RBP7.25□□□□□ -1.25
VPS13D-212ENST00000543766 PSMB2P49721 201 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 FOXA3P55318 350 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-212ENST00000543766 FAM53BQ14153 422 aa7.25□□□□□ -1.25
VPS13D-212ENST00000543766 IGFBP7Q16270 282 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms