RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	TBL2	Q9Y4P3	447 aa	Known RBP	11.96	□□□□□ -0.5
DDX55-209	ENST00000542286		K7EP13	123 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	ENSA	O43768	121 aa	Known RBP	11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	PRB4	P10163	310 aa	Predicted RBP	11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	CNTFR	P26992	372 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	PRCD	Q00LT1	54 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	MRPL36	Q9P0J6	103 aa	Known RBP	11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	PSG5	Q15238	335 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	RNF151	Q2KHN1	245 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	UNQ5815/PRO19632	Q6UWF5	114 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	CORO2A	Q92828	525 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	UHRF2	Q96PU4	802 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	NABP2	Q9BQ15	211 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	ALKBH7	Q9BT30	221 aa	Predicted RBP	11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	NRN1	Q9NPD7	142 aa		11.95	□□□□□ -0.5
DDX55-209	ENST00000542286	SNURFL	B1AK76	121 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	SLC25A17	O43808	307 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	CXorf1	O96002	111 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	LOX	P28300	417 aa	Predicted RBP	11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	HINT1	P49773	126 aa	Predicted RBP	11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	GNB4	Q9HAV0	340 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	CGB1	A6NKQ9	187 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286		K7EN84	100 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	NDUFB3	O43676	98 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	MPDU1	O75352	247 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	RNASE2	P10153	161 aa	Known RBP	11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	WT1-AS	Q06250	92 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF833P	Q6ZTB9	187 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF503	Q96F45	646 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	IL36B	Q9NZH7	164 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	PRND	Q9UKY0	176 aa		11.94	□□□□□ -0.5
DDX55-209	ENST00000542286	LOC105371242	A0A075B767	164 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	OR7C2	O60412	319 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	SPINK4	O60575	86 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	AMT	P48728	403 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR20E	P86478	221 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR20C	P86479	221 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR20D	P86480	221 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR20B	P86481	221 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR20A	P86496	221 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	RAB1C	Q92928	201 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	COMMD5	Q9GZQ3	224 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	COX11	Q9Y6N1	276 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	HCP5	Q6MZN7	132 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	NHLRC2	Q8NBF2	726 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF738	Q8NE65	137 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	ADTRP	Q96IZ2	230 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	WNT10A	Q9GZT5	417 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	LINC00574	Q9H8X3	128 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	JKAMP	Q9P055	326 aa		11.93	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF253	O75346	499 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	TOMM40	O96008	361 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	FLYWCH2	Q96CP2	140 aa	Known RBP	11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF430	Q9H8G1	570 aa	Predicted RBP	11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	HIVEP3	Q5T1R4	2406 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	PMCH	P20382	165 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	CRYBB3	P26998	211 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	RHOB	P62745	196 aa		11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	RPL8	P62917	257 aa	Known RBP	11.92	□□□□□ -0.5
DDX55-209	ENST00000542286	APOA2	P02652	100 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	SLC35B1	P78383	322 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	LRRC10	Q5BKY1	277 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	PRR31	Q5SQ13	230 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	LINC00479	Q96M42	142 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	NCOR1P1	Q9H4R4	102 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	TRAV9-1	A0A075B6T8	112 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	COX7A1	P24310	79 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	POU2AF1	Q16633	256 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286	RAB9B	Q9NP90	201 aa		11.91	□□□□□ -0.5
DDX55-209	ENST00000542286		A0A1W2PS18	150 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	KIAA1644	Q3SXP7	199 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	GSX1	Q9H4S2	264 aa	Predicted RBP	11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	BET1L	Q9NYM9	111 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	ZNF835	Q9Y2P0	537 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	PYY	P10082	97 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	TSPO	P30536	169 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	ATOH7	Q8N100	152 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	KLHDC1	Q8N7A1	406 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	ST6GALNAC3	Q8NDV1	305 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	OR4C5	Q8NGB2	326 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	OR5AN1	Q8NGI8	311 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	RCHY1	Q96PM5	261 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	NDUFA4L2	Q9NRX3	87 aa		11.9	□□□□□ -0.5
DDX55-209	ENST00000542286	IGHV1-69-2	A0A0G2JMI3	117 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	MOS	P00540	346 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	C3orf79	P0CE67	100 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	RAB31	Q13636	194 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	FXYD3	Q14802	87 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	FBLN7	Q53RD9	439 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	MMD2	Q8IY49	270 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	NPIPB3	Q92617	1050 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	SGK494	Q96LW2	274 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	CHODL	Q9H9P2	273 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	NAT8B	Q9UHF3	227 aa		11.9	□□□□□ -0.51
DDX55-209	ENST00000542286	GGTLC3	B5MD39	225 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286		K7ENP7	123 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	TNFRSF13B	O14836	293 aa	Predicted RBP	11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms