RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 UCP1P25874 307 aa11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 RPL5P46777 297 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 DHODHQ02127 395 aa11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 TRIM16LQ309B1 348 aa11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 OR13C8Q8NGS7 320 aa11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 PLA2G2EQ9NZK7 142 aa11.06□□□□□ -0.64
CLSTN3-213ENST00000541953 H3BMM0 161 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 SUB1P53999 127 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 FXYD7P58549 80 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 AARDQ4LEZ3 155 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 RNASE10Q5GAN6 216 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 FAAP20Q6NZ36 180 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 ZNF486Q96H40 463 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 PDCD10Q9BUL8 212 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 NACAE9PAV3 2078 aa11.05□□□□□ -0.64
CLSTN3-213ENST00000541953 IGLV2-18A0A075B6J9 118 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 HNRNPCP07910 306 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 OR5AC1P0C628 307 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 MED14OSP0DP75 135 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 OR10J1P30954 320 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 MEF2DQ14814 521 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 ZNF575Q86XF7 245 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 OR1S2Q8NGQ3 325 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 MARCH1Q8TCQ1 289 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 FUNDC2Q9BWH2 189 aa11.04□□□□□ -0.64
CLSTN3-213ENST00000541953 SMIM31A0A1B0GVY4 71 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 IGKV3-20P01619 116 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 IL4P05112 153 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 SPCS3P61009 180 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 ZNF705AQ6ZN79 300 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 GLYATL2Q8WU03 294 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 GPR146Q96CH1 333 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 ABHD1Q96SE0 405 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 NDUFAF3Q9BU61 184 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 WDR12Q9GZL7 423 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 NAA50Q9GZZ1 169 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 ENY2Q9NPA8 101 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 PRR13Q9NZ81 148 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 COPZ2Q9P299 210 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 CACNG5Q9UF02 275 aa11.03□□□□□ -0.64
CLSTN3-213ENST00000541953 ZNF705FA8MVS1 300 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 BUB3O43684 328 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 CD74P04233 296 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 ZNF705DP0CH99 300 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 ZNF705BP0CI00 300 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 P0DMU3 169 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM231AP0DMU4 169 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM231CP0DMU5 169 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 HLA-DRB4P13762 266 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 EMP1P54849 157 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 C2orf83Q53S99 150 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 SIGLEC15Q6ZMC9 328 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 Q6ZR54 194 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 SELENOHQ8IZQ5 122 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 ARRDC1Q8N5I2 433 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 RNASE11Q8TAA1 199 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 NPIPB3Q92617 1050 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 RRNAD1Q96FB5 475 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 NARS2Q96I59 477 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 TMEM222Q9H0R3 208 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 NRN1Q9NPD7 142 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 HEYLQ9NQ87 328 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 MTFP1Q9UDX5 166 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 HLA-DRB4X5D2U9 266 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 DNAH5Q8TE73 4624 aa11.02□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM25AB3EWG3 89 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM25CB3EWG5 89 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 FAM25GB3EWG6 89 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 CDS2O95674 445 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 HTR2BP41595 481 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 YPEL3P61236 119 aaPredicted RBP11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 SCGB2B2Q4G0G5 96 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 ZNF709Q8N972 641 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 SLC24A4Q8NFF2 622 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 Q8WTZ3 238 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 ACY3Q96HD9 319 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 RTBDNQ9BSG5 229 aaPredicted RBP11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 EXTL2Q9UBQ6 330 aa11.01□□□□□ -0.65
CLSTN3-213ENST00000541953 IGHV3OR16-12A0A075B7B8 117 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 TRAV30A0A087WSZ9 112 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 PSG1P11464 419 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 LGALS9BQ3B8N2 356 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 CCDC71LQ8N9Z2 235 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 OR51G1Q8NGK1 321 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 OR52E5Q8NH55 327 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 TERB2Q8NHR7 220 aa11□□□□□ -0.65
CLSTN3-213ENST00000541953 CTNNBIP1Q9NSA3 81 aaPredicted RBP11□□□□□ -0.65
CLSTN3-213ENST00000541953 A0A087WXM4 84 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 RPS10-NUDT3A0A1W2PQS6 291 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 ATG12O94817 140 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 TOMM40O96008 361 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 CENPSQ8N2Z9 138 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 RNASEH2CQ8TDP1 164 aaKnown RBP10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 SLC35B3Q9H1N7 401 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 MIXL1Q9H2W2 232 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 NAA60Q9H7X0 242 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 DKK2Q9UBU2 259 aa10.99□□□□□ -0.65
CLSTN3-213ENST00000541953 IGKV1D-37A0A075B6S9 117 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 CEBPZOSA8MTT3 80 aa10.98□□□□□ -0.65
CLSTN3-213ENST00000541953 F6UB75 175 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms