RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 CIB3Q96Q77 187 aaPredicted RBP9.02□□□□□ -0.97
VPS52-213ENST00000461743 FLVCR2Q9UPI3 526 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 COL7A1Q02388 2944 aa9.02□□□□□ -0.97
VPS52-213ENST00000461743 TMEM213A2RRL7 107 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 G3V3Q6 166 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 GNG7O60262 68 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 CFDP00746 253 aaPredicted RBP9.01□□□□□ -0.97
VPS52-213ENST00000461743 IFNA21P01568 189 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 SLC25A4P12235 298 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 GP9P14770 177 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 ANXA7P20073 488 aaKnown RBP9.01□□□□□ -0.97
VPS52-213ENST00000461743 BTN1A1Q13410 526 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 GGNBP1Q5YKI7 109 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 UBAC2Q8NBM4 344 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 CLRN3Q8NCR9 226 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 OR2T35Q8NGX2 323 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 OR4X1Q8NH49 305 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 DYNLRB2Q8TF09 96 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 RBKSQ9H477 322 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 DAZ1Q9NQZ3 744 aaKnown RBP9.01□□□□□ -0.97
VPS52-213ENST00000461743 DNAH9Q9NYC9 4486 aa9.01□□□□□ -0.97
VPS52-213ENST00000461743 IGHV3-21A0A0B4J1V1 117 aa9□□□□□ -0.97
VPS52-213ENST00000461743 C15orf62A8K5M9 175 aa9□□□□□ -0.97
VPS52-213ENST00000461743 MPTX1A8MV57 137 aa9□□□□□ -0.97
VPS52-213ENST00000461743 CTSGP08311 255 aa9□□□□□ -0.97
VPS52-213ENST00000461743 NMBP08949 121 aa9□□□□□ -0.97
VPS52-213ENST00000461743 HOXB5P09067 269 aa9□□□□□ -0.97
VPS52-213ENST00000461743 C8orf88P0DMB2 117 aa9□□□□□ -0.97
VPS52-213ENST00000461743 FOLR2P14207 255 aa9□□□□□ -0.97
VPS52-213ENST00000461743 ADMP35318 185 aa9□□□□□ -0.97
VPS52-213ENST00000461743 RAP2BP61225 183 aa9□□□□□ -0.97
VPS52-213ENST00000461743 PRR25Q96S07 402 aa9□□□□□ -0.97
VPS52-213ENST00000461743 CHRDL1Q9BU40 450 aa9□□□□□ -0.97
VPS52-213ENST00000461743 MRPL27Q9P0M9 148 aaKnown RBP9□□□□□ -0.97
VPS52-213ENST00000461743 TRAV30A0A087WSZ9 112 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 ZNF320A2RRD8 509 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 K7EMT4 169 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 L7N2F9 121 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 CLN5O75503 358 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 NXPH3O95157 252 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 IFNA10P01566 189 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 CBLN1P23435 193 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 RPP30P78346 268 aaKnown RBP8.99□□□□□ -0.97
VPS52-213ENST00000461743 UNQ9165/PRO28630Q6UXU0 137 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 ZNF600Q6ZNG1 722 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 TMEM116Q8NCL8 245 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 OR10C1Q96KK4 312 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 GINS3Q9BRX5 216 aa8.99□□□□□ -0.97
VPS52-213ENST00000461743 FNDC4Q9H6D8 234 aaPredicted RBP8.99□□□□□ -0.97
VPS52-213ENST00000461743 LSM4Q9Y4Z0 139 aaKnown RBP8.99□□□□□ -0.97
VPS52-213ENST00000461743 TRAV25A0A0B4J276 109 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 SYNGR2O43760 224 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 IL5P05113 134 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 BMI1P35226 326 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 RAB11AP62491 216 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 ADAMTSL5Q6ZMM2 481 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 HAPLN4Q86UW8 402 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 OR4D5Q8NGN0 318 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 TMEM170AQ8WVE7 144 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 ASB13Q8WXK3 278 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 B9D2Q9BPU9 175 aa8.98□□□□□ -0.97
VPS52-213ENST00000461743 HMSDA8MTL9 139 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 SNRPGP15A8MWD9 76 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 ADAP1O75689 374 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 TMEM50AO95807 157 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 CXCL2P19875 107 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 GPX4P36969 197 aaPredicted RBP8.97□□□□□ -0.97
VPS52-213ENST00000461743 NKX2-1P43699 371 aaPredicted RBP8.97□□□□□ -0.97
VPS52-213ENST00000461743 ID3Q02535 119 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 CD69Q07108 199 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 DEFB114Q30KQ6 69 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 CD300EQ496F6 205 aaPredicted RBP8.97□□□□□ -0.97
VPS52-213ENST00000461743 SLC16A13Q7RTY0 426 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 GTSCR1Q86UQ5 136 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 OR52B4Q8NGK2 314 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 OR1S2Q8NGQ3 325 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 PCNPQ8WW12 178 aaKnown RBP8.97□□□□□ -0.97
VPS52-213ENST00000461743 CACNG8Q8WXS5 425 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 GPN1Q9HCN4 374 aaPredicted RBP8.97□□□□□ -0.97
VPS52-213ENST00000461743 MGAT4CQ9UBM8 478 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 SMAD5-AS1Q9Y6J3 95 aa8.97□□□□□ -0.97
VPS52-213ENST00000461743 IGHV3-35A0A0C4DH35 117 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 FAM25EA8MYX2 175 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 DNASE2O00115 360 aaPredicted RBP8.96□□□□□ -0.98
VPS52-213ENST00000461743 WRBO00258 174 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 IFNA4P05014 189 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 CD5P06127 495 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 IAH1Q2TAA2 248 aaPredicted RBP8.96□□□□□ -0.98
VPS52-213ENST00000461743 TM4SF20Q53R12 229 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 PRSS54Q6PEW0 395 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 ZNF414Q96IQ9 312 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 ZFAND3Q9H8U3 227 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 MLXQ9UH92 298 aa8.96□□□□□ -0.98
VPS52-213ENST00000461743 IGHV7-4-1A0A0J9YVY3 117 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 ZNF98A6NK75 572 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 A8MZ25 164 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 IGHV3-48P01763 117 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 H2AFB1P0C5Y9 115 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 IGLC1P0CG04 106 aa8.95□□□□□ -0.98
VPS52-213ENST00000461743 IAPPP10997 89 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms