RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 FAM168AQ92567 244 aa11.91□□□□□ -0.5
USP4-203ENST00000415188 SCO2A0A1W2PP80 73 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 CUBNO60494 3623 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 FBN1P35555 2871 aaKnown RBP11.9□□□□□ -0.5
USP4-203ENST00000415188 PRRX1P54821 245 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 DSCR9P59020 149 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 ACTL10Q5JWF8 245 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 ARFGEF3Q5TH69 2177 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 SPATA31B1PQ5VZV4 182 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 TEX45Q8NA69 505 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 NECAP1Q8NC96 275 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 C10orf105Q8TEF2 133 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 SFRP2Q96HF1 295 aa11.9□□□□□ -0.5
USP4-203ENST00000415188 A0A1W2PPQ1 181 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 FABP1P07148 127 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 PPOXP50336 477 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 LOXL1Q08397 574 aaPredicted RBP11.89□□□□□ -0.51
USP4-203ENST00000415188 MIR17HGQ75NE6 70 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 OR1L4Q8NGR5 311 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 ELOVL1Q9BW60 279 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 TNCP24821 2201 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 ATRQ13535 2644 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 C8orf88P0DMB2 117 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 SLC25A16P16260 332 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 REG1BP48304 166 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 SELENOTP62341 195 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 ETFRF1Q6IPR1 90 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 TMEM183AQ8IXX5 376 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 THAP8Q8NA92 274 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 BEND2Q8NDZ0 799 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 OR10G8Q8NGN5 311 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 PFDN5Q99471 154 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 DERL1Q9BUN8 251 aa11.89□□□□□ -0.51
USP4-203ENST00000415188 ZNF430Q9H8G1 570 aaPredicted RBP11.89□□□□□ -0.51
USP4-203ENST00000415188 IGKV1OR2-108A0A075B7D4 117 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 A0A1W2PRE2 83 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 CTAG1AP78358 180 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 PAX2Q02962 417 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 PVRIGQ6DKI7 326 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 MMD2Q8IY49 270 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 C11orf42Q8N5U0 333 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 ZNF114Q8NC26 417 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 OR10W1Q8NGF6 305 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 C8orf46Q8TAG6 207 aa11.88□□□□□ -0.51
USP4-203ENST00000415188 AMMECR1Q9Y4X0 333 aaPredicted RBP11.88□□□□□ -0.51
USP4-203ENST00000415188 TRBV20OR9-2A0A075B6H5 130 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 CGB1A6NKQ9 187 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 FOXH1O75593 365 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 IGHV2-70P01814 119 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 IGHV4-31P0DP07 118 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 PDLIM4P50479 330 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 BPIFB3P59826 476 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 PSG5Q15238 335 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 TEX38Q6PEX7 206 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 OR5T1Q8NG75 326 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 OR1P1Q8NH06 330 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 CLEC7AQ9BXN2 247 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 GSN-AS1Q9NRJ2 163 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 COL6A5A8TX70 2615 aa11.87□□□□□ -0.51
USP4-203ENST00000415188 IGHV2-26A0A0B4J1V2 119 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 TCRBV4S1A1TA0A5B7 111 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 PSMB11A5LHX3 300 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 VWC2LB2RUY7 222 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 ACTL6BO94805 426 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 IGLV1-47P01700 117 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 WT1-ASQ06250 92 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 MOB3BQ86TA1 216 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 OCC1Q8TAD7 63 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 RNF5Q99942 180 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 SLC25A33Q9BSK2 321 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 GPR61Q9BZJ8 451 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 DNAJC4Q9NNZ3 241 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 MIOXQ9UGB7 285 aa11.86□□□□□ -0.51
USP4-203ENST00000415188 CORTO00230 105 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 SLC25A17O43808 307 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 CRYGBP07316 175 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 OR10J4P0C629 311 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 COMPP49747 757 aaPredicted RBP11.85□□□□□ -0.51
USP4-203ENST00000415188 DIAPH2-AS1Q14236 149 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 PYY3Q5JQD4 70 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 ZNF841Q6ZN19 808 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 OR10D4PQ8NGN7 298 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 ZNF503Q96F45 646 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 EAF1Q96JC9 268 aaPredicted RBP11.85□□□□□ -0.51
USP4-203ENST00000415188 PIMREGQ9BSJ6 248 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 IL36BQ9NZH7 164 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 DMRT1Q9Y5R6 373 aa11.85□□□□□ -0.51
USP4-203ENST00000415188 IGHV4-61A0A0C4DH41 118 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 XKRY2A2RUG3 117 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 OR7C2O60412 319 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 CRYGCP07315 174 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 RPL27AP46776 148 aaKnown RBP11.84□□□□□ -0.51
USP4-203ENST00000415188 RPL15P61313 204 aaKnown RBP11.84□□□□□ -0.51
USP4-203ENST00000415188 RPL19P84098 196 aaKnown RBP11.84□□□□□ -0.51
USP4-203ENST00000415188 PRSS8Q16651 343 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 GFI1BQ5VTD9 330 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 CYB5R2Q6BCY4 276 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 OR8B3Q8NGG8 313 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 SGMS2Q8NHU3 365 aa11.84□□□□□ -0.51
USP4-203ENST00000415188 C22orf15Q8WYQ4 148 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms