RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RNF212Q495C1 297 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 LCE2DQ5TA82 110 aaPredicted RBP8.08□□□□□ -1.12
VPS53-202ENST00000389040 CTRB2Q6GPI1 263 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 FAM24BQ8N5W8 94 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 STPG3Q8N7X2 389 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 OR10W1Q8NGF6 305 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 GATAD1Q8WUU5 269 aa8.08□□□□□ -1.12
VPS53-202ENST00000389040 ZNF727A8MUV8 499 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 INS-IGF2F8WCM5 200 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 TMEM250H0YL14 139 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 RNASE2P10153 161 aaKnown RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 RAB5AP20339 215 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 LGALS7P47929 136 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 B2MP61769 119 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 FOXL1Q12952 345 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 Q8N6K4 173 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 OR4F5Q8NH21 305 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 EAF1Q96JC9 268 aaPredicted RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 YPEL4Q96NS1 127 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 OR4F4Q96R69 305 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 C16orf95Q9H693 158 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 JMJD1CQ15652 2540 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 A0A1W2PN81 502 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 TMEM89A2RUT3 159 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 CXorf65A6NEN9 183 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 PAGE4O60829 102 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 STAG3L2P0CL84 134 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 STAG3L3P0CL85 134 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 TMEM11P17152 192 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 CHRNA7P36544 502 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 RPL29P47914 159 aaKnown RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 COMPP49747 757 aaPredicted RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 RAB5BP61020 215 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 ERHP84090 104 aaKnown RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 HES1Q14469 280 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 VMA21Q3ZAQ7 101 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 SMIM7Q9BQ49 75 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 SLC25A33Q9BSK2 321 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 ZNF430Q9H8G1 570 aaPredicted RBP8.07□□□□□ -1.12
VPS53-202ENST00000389040 SDF2L1Q9HCN8 221 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 MOB4Q9Y3A3 225 aa8.07□□□□□ -1.12
VPS53-202ENST00000389040 TNCP24821 2201 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 C1orf196B1AJZ1 125 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 E7EUB6 86 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 SLC25A17O43808 307 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 CXorf1O96002 111 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 MAS1LP35410 378 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRR20EP86478 221 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRR20CP86479 221 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRR20DP86480 221 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRR20BP86481 221 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRR20AP86496 221 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 ZNF674Q2M3X9 581 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 TMEM144Q7Z5S9 345 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 ZFP82Q8N141 532 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 Q8N2B8 174 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 NPBQ8NG41 125 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 RITA1Q96K30 269 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 PRSS22Q9GZN4 317 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 NAT8Q9UHE5 227 aa8.06□□□□□ -1.12
VPS53-202ENST00000389040 IGHV3-72A0A0B4J1Y9 119 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 C11orf94C9JXX5 98 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 ARL14EPLP0DKL9 152 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 RHOBP62745 196 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 CD69Q07108 199 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 GAMTQ14353 236 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 LY6EQ16553 131 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 CYP2G1PQ6ZSU1 146 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 ABHD5Q8WTS1 349 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 RPUSD4Q96CM3 377 aaKnown RBP8.05□□□□□ -1.12
VPS53-202ENST00000389040 DUX5Q96PT3 197 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 TPSG1Q9NRR2 321 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 CGB1A6NKQ9 187 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 GPX4P36969 197 aaPredicted RBP8.05□□□□□ -1.12
VPS53-202ENST00000389040 WT1-ASQ06250 92 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 ELOBQ15370 118 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 TMEM241Q24JQ0 296 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 C10orf55Q5SWW7 151 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 TEX45Q8NA69 505 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 C2CD4CQ8TF44 421 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 CACNG8Q8WXS5 425 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 PARLQ9H300 379 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 SAV1Q9H4B6 383 aaPredicted RBP8.05□□□□□ -1.12
VPS53-202ENST00000389040 SEPSECSQ9HD40 501 aaKnown RBP8.05□□□□□ -1.12
VPS53-202ENST00000389040 BIN3Q9NQY0 253 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 TNFRSF19Q9NS68 423 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 TMEM242Q9NWH2 141 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 SLC45A2Q9UMX9 530 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 CUBNO60494 3623 aa8.05□□□□□ -1.12
VPS53-202ENST00000389040 IGKV1OR2-108A0A075B7D4 117 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 PDE6DO43924 150 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 NDUFA3O95167 84 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 LINC00869P0C866 280 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 SUB1P53999 127 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS53-202ENST00000389040 UBE2G2P60604 165 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 MRGPRG-AS1Q2M3A8 158 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 KRTAP24-1Q3LI83 254 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 SLC16A13Q7RTY0 426 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 OR2T6Q8NHC8 308 aa8.04□□□□□ -1.12
VPS53-202ENST00000389040 RNASEH2CQ8TDP1 164 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms