RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 IGHV3-23P01764 117 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 OR10J1P30954 320 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 CAMLGP49069 296 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 TPPP2P59282 170 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 UQCC3Q6UW78 93 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 FAM223AQ8IWN6 122 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 PSMG3Q9BT73 122 aaPredicted RBP15.48■□□□□ 0.07
CLN3-205ENST00000359984 C21orf62Q9NYP8 219 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 TIMM9Q9Y5J7 89 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 PSMB11A5LHX3 300 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 NUDT19A8MXV4 375 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 F8W735 103 aaPredicted RBP15.48■□□□□ 0.07
CLN3-205ENST00000359984 MFAP4P55083 255 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 RAB31Q13636 194 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 LCNL1Q6ZST4 164 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 ZNF709Q8N972 641 aa15.48■□□□□ 0.07
CLN3-205ENST00000359984 CLN5O75503 358 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 PSMB8P28062 276 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 RAB9AP51151 201 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 SLC35B1P78383 322 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 SRSF2Q01130 221 aaKnown RBP15.47■□□□□ 0.07
CLN3-205ENST00000359984 ATP5G2Q06055 141 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 PXDC1Q5TGL8 231 aa15.47■□□□□ 0.07
CLN3-205ENST00000359984 ZFP92A6NM28 416 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 C17orf112F2Z3M2 114 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 NPBWR1P48145 328 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 TMEM182Q6ZP80 229 aaPredicted RBP15.46■□□□□ 0.07
CLN3-205ENST00000359984 LYPD6BQ8NI32 183 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 ZNF502Q8TBZ5 544 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 C16orf95Q9H693 158 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 SLC45A2Q9UMX9 530 aa15.46■□□□□ 0.07
CLN3-205ENST00000359984 TMEM89A2RUT3 159 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 IGLC1P0CG04 106 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 BLOC1S1P78537 153 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 MIC13Q5XKP0 118 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 TEX38Q6PEX7 206 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 IL34Q6ZMJ4 242 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 BPIFCQ8NFQ6 507 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 TRGV9Q99603 122 aa15.46■□□□□ 0.06
CLN3-205ENST00000359984 ZNF90Q03938 601 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 Q56UQ5 140 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 CYP2G1PQ6ZSU1 146 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 EEF1AKMT3Q96AZ1 226 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 USMG5Q96IX5 58 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 TXN2Q99757 166 aa15.45■□□□□ 0.06
CLN3-205ENST00000359984 TCRBV4S1A1TA0A5B7 111 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 SCO1O75880 301 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 IGKV1-17P01599 117 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 GATA2P23769 480 aaPredicted RBP15.44■□□□□ 0.06
CLN3-205ENST00000359984 FCGR2BP31994 310 aaPredicted RBP15.44■□□□□ 0.06
CLN3-205ENST00000359984 RPL29P47914 159 aaKnown RBP15.44■□□□□ 0.06
CLN3-205ENST00000359984 SERF2P84101 59 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 FOXE3Q13461 319 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 CCDC140Q96MF4 163 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 PXMP4Q9Y6I8 212 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 GNG7O60262 68 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 NDUFA7O95182 113 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 ELANEP08246 267 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 LINC00869P0C866 280 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 ELLP55199 621 aaPredicted RBP15.44■□□□□ 0.06
CLN3-205ENST00000359984 PRR20EP86478 221 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 PRR20CP86479 221 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 PRR20DP86480 221 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 PRR20BP86481 221 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 PRR20AP86496 221 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 TIGITQ495A1 244 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 FFAR4Q5NUL3 377 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 STPG3Q8N7X2 389 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 LINC01006Q8NI28 216 aa15.44■□□□□ 0.06
CLN3-205ENST00000359984 NIPBLQ6KC79 2804 aaeCLIP15.43■□□□□ 0.06
CLN3-205ENST00000359984 TEP1Q99973 2627 aaKnown RBP15.43■□□□□ 0.06
CLN3-205ENST00000359984 TRBV7-1A0A0A6YYK4 115 aa15.43■□□□□ 0.06
CLN3-205ENST00000359984 OR2T8A6NH00 312 aa15.43■□□□□ 0.06
CLN3-205ENST00000359984 KIAA0141Q14154 515 aaPredicted RBP15.43■□□□□ 0.06
CLN3-205ENST00000359984 KLHDC1Q8N7A1 406 aa15.43■□□□□ 0.06
CLN3-205ENST00000359984 VSIRQ9H7M9 311 aa15.43■□□□□ 0.06
CLN3-205ENST00000359984 TRAV30A0A087WSZ9 112 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 YIF1AO95070 293 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 CLEC3BP05452 202 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 B2MP61769 119 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 AKR1C8PQ5T2L2 129 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 Q6ZRG5 221 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 RNF152Q8N8N0 203 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 HRH4Q9H3N8 390 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 KCNIP2Q9NS61 270 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 SLC39A9Q9NUM3 307 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 A0A0G2JLM5 398 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 UMAD1C9J7I0 102 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 TSPAN15O95858 294 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 RPLP1P05386 114 aaKnown RBP15.42■□□□□ 0.06
CLN3-205ENST00000359984 CTSGP08311 255 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 GPR183P32249 361 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 RAB5CP51148 216 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 SELENOTP62341 195 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 SRSF3P84103 164 aaKnown RBP15.42■□□□□ 0.06
CLN3-205ENST00000359984 CLEC19AQ6UXS0 136 aa15.42■□□□□ 0.06
CLN3-205ENST00000359984 IGHV3-11P01762 117 aa15.41■□□□□ 0.06
CLN3-205ENST00000359984 FHITP49789 147 aa15.41■□□□□ 0.06
CLN3-205ENST00000359984 OR5AU1Q8NGC0 362 aa15.41■□□□□ 0.06
CLN3-205ENST00000359984 CHRDL1Q9BU40 450 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms