RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GCGP01275 180 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 RPEQ96AT9 228 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 ADMP35318 185 aa16.66■□□□□ 0.26
CCDC88B-203ENST00000359902 LY6G5BQ8NDX9 201 aa16.66■□□□□ 0.26
CCDC88B-203ENST00000359902 RNASE7Q9H1E1 156 aaKnown RBP16.66■□□□□ 0.26
CCDC88B-203ENST00000359902 RELNP78509 3460 aa16.66■□□□□ 0.26
CCDC88B-203ENST00000359902 ABCA4P78363 2273 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 LINC00305Q7Z4B0 112 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 FXYD5Q96DB9 178 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 OSTCQ9NRP0 149 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 AMMECR1Q9Y4X0 333 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 IGF2RP11717 2491 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 TEX22C9J3V5 150 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 MOSP00540 346 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 GZMBP10144 247 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 CBLN1P23435 193 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 TMEM116Q8NCL8 245 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 TRGV9Q99603 122 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 ONECUT1Q9UBC0 465 aa16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 TPRP12270 2363 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-203ENST00000359902 GBGT1Q8N5D6 347 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 OR5R1Q8NH85 324 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 RAB1BQ9H0U4 201 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 FBXL15Q9H469 300 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 LRBAP50851 2863 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 TSTD3H0UI37 97 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 ISLRO14498 428 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 LIPFP07098 398 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 ORM2P19652 201 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 SSX2Q16385 188 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 LDLRAD2Q5SZI1 272 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 ZNF329Q86UD4 541 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 TMEM18Q96B42 140 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 LINC00479Q96M42 142 aa16.64■□□□□ 0.25
CCDC88B-203ENST00000359902 FCN1O00602 326 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 FRMD6-AS1P0C7T7 363 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 OR8I2Q8N0Y5 310 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 OR1L6Q8NGR2 347 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 CDC42EP3Q9UKI2 254 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 F11RQ9Y624 299 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 IGHV3-21A0A0B4J1V1 117 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 A0A1B0GUS0 222 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 TAS2R60P59551 318 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 PKIAP61925 76 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 TMEM256Q8N2U0 113 aa16.63■□□□□ 0.25
CCDC88B-203ENST00000359902 PAX2Q02962 417 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 FXYD3Q14802 87 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 REC114Q7Z4M0 266 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 OR1B1Q8NGR6 318 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 C22orf15Q8WYQ4 148 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 RNF5Q99942 180 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 CORTO00230 105 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 MGST1P10620 155 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 DDTP30046 118 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 NHLH1Q02575 133 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 PERPQ96FX8 193 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 MRPL18Q9H0U6 180 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 DCHS2Q6V1P9 2916 aa16.62■□□□□ 0.25
CCDC88B-203ENST00000359902 A0A1B0GV90 55 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 IER3P46695 156 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 CBLN4Q9NTU7 201 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 NUPR1O60356 82 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 SNRPCP09234 159 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 MYCNOSP40205 109 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 LHFPL4Q7Z7J7 247 aa16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 SRSF12Q8WXF0 261 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-203ENST00000359902 ARF6P62330 175 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 CX3CL1P78423 397 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 IBA57Q5T440 356 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 TPTE2P1Q5T6R2 138 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 C11orf71Q6IPW1 123 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 NHLRC2Q8NBF2 726 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 STXBP6Q8NFX7 210 aa16.6■□□□□ 0.25
CCDC88B-203ENST00000359902 PEX7O00628 323 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 TIMM23O14925 209 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 RNF224P0DH78 156 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 GSX1Q9H4S2 264 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 GRIFINA4D1Z8 144 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 OR11H6Q8NGC7 330 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 TIMD4Q96H15 378 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 ZZEF1O43149 2961 aa16.59■□□□□ 0.25
CCDC88B-203ENST00000359902 TACC2O95359 2948 aa16.58■□□□□ 0.25
CCDC88B-203ENST00000359902 HYPMO75409 117 aa16.58■□□□□ 0.25
CCDC88B-203ENST00000359902 HTR1DP28221 377 aa16.58■□□□□ 0.25
CCDC88B-203ENST00000359902 RANP62826 216 aaKnown RBP16.58■□□□□ 0.25
CCDC88B-203ENST00000359902 GNB1LQ9BYB4 327 aa16.58■□□□□ 0.25
CCDC88B-203ENST00000359902 NBASA2RRP1 2371 aa16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 TRAV34A0A0B4J273 112 aa16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 PLP1P60201 277 aa16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 PLGLAQ15195 96 aa16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 LBHQ53QV2 105 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 TP53TG3Q9ULZ0 132 aa16.58■□□□□ 0.24
CCDC88B-203ENST00000359902 TRBV9A0A0B4J1U6 114 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 SMIM27A0A1W2PRY6 76 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 SNURFLB1AK76 121 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 DPM3Q9P2X0 92 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 ATRXP46100 2492 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 I3L2K1 104 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 SPINK4O60575 86 aa16.57■□□□□ 0.24
CCDC88B-203ENST00000359902 TCL1AP56279 114 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 967.8 ms