RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GABRA2P47869 451 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 RAB5CP51148 216 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 ABCA11PQ4W5N1 156 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 TMEM41BQ5BJD5 291 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 OR2B11Q5JQS5 317 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 FAM120AOSQ5T036 256 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 PQLC2Q6ZP29 291 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 OR1L8Q8NGR8 309 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 ISOC2Q96AB3 205 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 FXYD5Q96DB9 178 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 GGACTQ9BVM4 153 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 HRH4Q9H3N8 390 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 KLF12Q9Y4X4 402 aa1.79□□□□□ -2.12
VPS54-202ENST00000354504 HELZ2Q9BYK8 2649 aaKnown RBP1.79□□□□□ -2.12
VPS54-202ENST00000354504 IGHV2-26A0A0B4J1V2 119 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 WI2-2373I1.2A0A1W2PRP0 233 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 C7orf77A4D0Y5 90 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TMEM8BA6NDV4 472 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 NKX6-3A6NJ46 265 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ZNF727A8MUV8 499 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ZNF705EA8MWA4 302 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 H3BP45 60 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 NUPL2O15504 423 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 SPRY3O43610 288 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TIMM8AO60220 97 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 BRI3O95415 125 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ESDP10768 282 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 IAPPP10997 89 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 FCGR2BP31994 310 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 EDDM3BP56851 147 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 SELENOVP59797 346 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 RPL23P62829 140 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 CCL8P80075 99 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 SERF2P84101 59 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 HLA-DRB5Q30154 266 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ABHD12Q8N2K0 398 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ARL6IP6Q8N6S5 226 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 CCDC71LQ8N9Z2 235 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 LFNGQ8NES3 379 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 OR51G1Q8NGK1 321 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 DTD1Q8TEA8 209 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TMEM18Q96B42 140 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 RAB39BQ96DA2 213 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TVP23CQ96ET8 276 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 FAM19A4Q96LR4 140 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ZNF48Q96MX3 618 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 P2RX4Q99571 388 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 PRSS22Q9GZN4 317 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 MRPL27Q9P0M9 148 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 TCF19Q9Y242 345 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 STRAPQ9Y3F4 350 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 SOX21Q9Y651 276 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 ANKRD17O75179 2603 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 HIVEP1P15822 2718 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TRBV24-1A0A075B6N3 115 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 C19orf71A6NCJ1 209 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 GGCTO75223 188 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 MED6O75586 246 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 NDUFB8O95169 186 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 CA2P00918 260 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 CRYAAP02489 173 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 OR10J4P0C629 311 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 BCL2P10415 239 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 RPL29P47914 159 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 CRIP1P50238 77 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 CEBPGP53567 150 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 SPCS3P61009 180 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 DLK1P80370 383 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TMEM30BQ3MIR4 351 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 KHDC3LQ587J8 217 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 SPINK9Q5DT21 86 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 KLF17Q5JT82 389 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 C10orf55Q5SWW7 151 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 GFRALQ6UXV0 394 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 LINC01551Q86U37 167 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 KIR3DL3Q8N743 410 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 C15orf54Q8N8G6 183 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 LINC01560Q8TB33 94 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 MYOZ3Q8TDC0 251 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ARL11Q969Q4 196 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ZNF714Q96N38 554 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ZNF430Q9H8G1 570 aaPredicted RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 TECRQ9NZ01 308 aaKnown RBP1.78□□□□□ -2.12
VPS54-202ENST00000354504 GLS2Q9UI32 602 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 TRAPPC2LQ9UL33 140 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 KCNS2Q9ULS6 477 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 ARL2-SNX15V9GYD0 113 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 V9GYV3 84 aa1.78□□□□□ -2.12
VPS54-202ENST00000354504 IGLV11-55A0A075B6I3 123 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 IGHV1-3A0A0C4DH29 117 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 A4D1N5 150 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 LINC01546A6NGU7 62 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 UMAD1C9J7I0 102 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 H3BQ15 152 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BKO60814 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 IGKV1-17P01599 117 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BJP06899 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 IGLC2P0DOY2 106 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BOP23527 126 aa1.78□□□□□ -2.13
VPS54-202ENST00000354504 HIST1H2BBP33778 126 aa1.78□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms