RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 THNSL2Q86YJ6 484 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 OR5AU1Q8NGC0 362 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 OR10P1Q8NGE3 313 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 OR1S2Q8NGQ3 325 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 RNF141Q8WVD5 230 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 TMEM170AQ8WVE7 144 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ARV1Q9H2C2 271 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ZNF702PQ9H963 129 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 IGKV3-7A0A075B6H7 116 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ZFP92A6NM28 416 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 C15orf62A8K5M9 175 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 PPP5D1E7EU14 171 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 HMGB3O15347 200 aaKnown RBP7.22□□□□□ -1.25
USP4-202ENST00000351842 NDUFB8O95169 186 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 MBP02144 154 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 POU2AF1Q16633 256 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 NPIPB3Q92617 1050 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 C20orf24Q9BUV8 137 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ZNF320A2RRD8 509 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 RAB11AP62491 216 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 RPL7L1Q6DKI1 246 aaKnown RBP7.22□□□□□ -1.25
USP4-202ENST00000351842 C9orf139Q6ZV77 190 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ZNF429Q86V71 674 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 SGMS2Q8NHU3 365 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 FAM216AQ8WUB2 273 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 RAB40CQ96S21 281 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 SEC11CQ9BY50 192 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 RNF114Q9Y508 228 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 IGHV3-66A0A0C4DH42 116 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 M0QZK8 103 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 TRBV12-3P01733 135 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 HKR1P10072 659 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 RNASE2P10153 161 aaKnown RBP7.21□□□□□ -1.26
USP4-202ENST00000351842 RSG1Q9BU20 258 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 FNDC4Q9H6D8 234 aaPredicted RBP7.21□□□□□ -1.26
USP4-202ENST00000351842 DMRT1Q9Y5R6 373 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 HAPLN4Q86UW8 402 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 LINC01006Q8NI28 216 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 C14orf144Q96I85 54 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 RNF5Q99942 180 aa7.21□□□□□ -1.26
USP4-202ENST00000351842 IGHG2P01859 326 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 RNF212Q495C1 297 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 PRIMA1Q86XR5 153 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 SVBPQ8N300 66 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 CIB3Q96Q77 187 aaPredicted RBP7.2□□□□□ -1.26
USP4-202ENST00000351842 LYRM2Q9NU23 88 aaPredicted RBP7.2□□□□□ -1.26
USP4-202ENST00000351842 CD5P06127 495 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 SUB1P53999 127 aaKnown RBP eCLIP7.2□□□□□ -1.26
USP4-202ENST00000351842 BTNL8Q6UX41 500 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 OR4A5Q8NH83 315 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 JMJD8Q96S16 334 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 GNG7O60262 68 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 CLEC3BP05452 202 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 CD28P10747 220 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 SULT1A2P50226 295 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 RAB4BP61018 213 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 TCEAL7Q9BRU2 100 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 SH3BGRL3Q9H299 93 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 FAM212BQ9NTI7 297 aaPredicted RBP7.2□□□□□ -1.26
USP4-202ENST00000351842 ZNF257Q9Y2Q1 563 aa7.2□□□□□ -1.26
USP4-202ENST00000351842 PIGBOS1A0A0B4J2F0 54 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 EIF5AP63241 154 aaKnown RBP7.19□□□□□ -1.26
USP4-202ENST00000351842 ZNF90Q03938 601 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 CITED2Q99967 270 aaPredicted RBP7.19□□□□□ -1.26
USP4-202ENST00000351842 SLC25A31Q9H0C2 315 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 WFDC1Q9HC57 220 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 SERTAD4Q9NUC0 356 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 F11RQ9Y624 299 aaKnown RBP7.19□□□□□ -1.26
USP4-202ENST00000351842 RNASE1P07998 156 aaKnown RBP7.19□□□□□ -1.26
USP4-202ENST00000351842 FGF7P21781 194 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 SULT1A1P50225 295 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 SLC35B1P78383 322 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 KLHL30-AS1Q8NEE0 82 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 SLC35E1Q96K37 410 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 NBEAL2Q6ZNJ1 2754 aa7.19□□□□□ -1.26
USP4-202ENST00000351842 TCRBV4S1A1TA0A5B7 111 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 FOLR2P14207 255 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 ORM2P19652 201 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 HBG1P69891 147 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 HBG2P69892 147 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 GUCA2BQ16661 112 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 GCSAMLQ5JQS6 135 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 C8orf86Q6ZUL3 223 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 MRPL41Q8IXM3 137 aaKnown RBP7.18□□□□□ -1.26
USP4-202ENST00000351842 TMED6Q8WW62 240 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 FANCD2OSQ96PS1 177 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 SCRT1Q9BWW7 348 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 RAB9AP51151 201 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 KRTAP24-1Q3LI83 254 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 CBLN2Q8IUK8 224 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 SCGB1C1Q8TD33 95 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 C11orf1Q9H5F2 150 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 UQCC1Q9NVA1 299 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 FAM90A26D6RGX4 464 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 OR2C1O95371 312 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 HSPB1P04792 205 aaKnown RBP7.18□□□□□ -1.26
USP4-202ENST00000351842 SLC25A6P12236 298 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 OR10J1P30954 320 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 P2RY1P47900 373 aa7.18□□□□□ -1.26
USP4-202ENST00000351842 GAMTQ14353 236 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms