RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IGHV4-31P0DP07 118 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 OR5T1Q8NG75 326 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 OR4X1Q8NH49 305 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 MBD6Q96DN6 1003 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 C20orf24Q9BUV8 137 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 IGLV11-55A0A075B6I3 123 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 PSMB11A5LHX3 300 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 FAM74A7A6NL05 159 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 H3BUX3 64 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 J3QLI3 93 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 M0R036 132 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 GCHFRP30047 84 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 BPIFB3P59826 476 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 ECSCRQ19T08 205 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 FAM74A3Q4VXF1 159 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 AWAT1Q58HT5 328 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 OR4F5Q8NH21 305 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 SGMS2Q8NHU3 365 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 NANPQ8TBE9 248 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 FANCD2OSQ96PS1 177 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 OR4F4Q96R69 305 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 PFDN5Q99471 154 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 DNAJC4Q9NNZ3 241 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 LY6EQ16553 131 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 C10orf113Q5VZT2 155 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 FAM90A2PQ658T7 463 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 KRTAP1-3Q8IUG1 177 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 OR1L4Q8NGR5 311 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 TMUB1Q9BVT8 246 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 MRPL32Q9BYC8 188 aaKnown RBP10.55□□□□□ -0.72
HMGB1-202ENST00000339872 TECRQ9NZ01 308 aaKnown RBP10.55□□□□□ -0.72
HMGB1-202ENST00000339872 S4R3C0 116 aa10.55□□□□□ -0.72
HMGB1-202ENST00000339872 NAV2Q8IVL1 2488 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 C11orf94C9JXX5 98 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 OR7C2O60412 319 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 IGLC1P0CG04 106 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 CST9LP1Q5W188 147 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 TMEM88Q6PEY1 159 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 UNQ5815/PRO19632Q6UWF5 114 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 TMA7Q9Y2S6 64 aaKnown RBP10.54□□□□□ -0.72
HMGB1-202ENST00000339872 ZFHX3Q15911 3703 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 APCP25054 2843 aa10.54□□□□□ -0.72
HMGB1-202ENST00000339872 H3BQ15 152 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 DNASE2O00115 360 aaPredicted RBP10.53□□□□□ -0.72
HMGB1-202ENST00000339872 TAS2R45P59539 299 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 KIAA0141Q14154 515 aaPredicted RBP10.53□□□□□ -0.72
HMGB1-202ENST00000339872 MORN5Q5VZ52 161 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 UHRF2Q96PU4 802 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 RNF2Q99496 336 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 NIPSNAP3BQ9BS92 247 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 MDFIC2A0A1B0GVS7 189 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 LINC01548A6NM66 108 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 CLN5O75503 358 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 ORM2P19652 201 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 AKR1C3P42330 323 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 ATP5G3P48201 142 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 TIGITQ495A1 244 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 PRSS57Q6UWY2 283 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 PATE2Q6UY27 113 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 CBLN2Q8IUK8 224 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 OR1B1Q8NGR6 318 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 THYN1Q9P016 225 aa10.53□□□□□ -0.72
HMGB1-202ENST00000339872 OR2J3O76001 311 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 C8orf88P0DMB2 117 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 PQLC2Q6ZP29 291 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 FAM110DQ8TAY7 271 aaPredicted RBP10.52□□□□□ -0.72
HMGB1-202ENST00000339872 SUN5Q8TC36 379 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 RPS10P5Q9NQ39 176 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 ZNF355PQ9NSJ1 428 aa10.52□□□□□ -0.72
HMGB1-202ENST00000339872 TRAV5A0A0B4J249 113 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 TMEM250H0YL14 139 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 AMY1AP04745 511 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 PSG1P11464 419 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 ZNF674Q2M3X9 581 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 RPUSD4Q96CM3 377 aaKnown RBP10.52□□□□□ -0.73
HMGB1-202ENST00000339872 ZNF503Q96F45 646 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 SLC25A2Q9BXI2 301 aa10.52□□□□□ -0.73
HMGB1-202ENST00000339872 YTHDF2Q9Y5A9 579 aaKnown RBP10.52□□□□□ -0.73
HMGB1-202ENST00000339872 NBPF19A0A087WUL8 3843 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 ELOA3CA0A087WX78 387 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-202ENST00000339872 C7orf77A4D0Y5 90 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 A6NDX4 124 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 G3V318 75 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 IGKV1-17P01599 117 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 OR10J4P0C629 311 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 C9orf152Q5JTZ5 239 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 LINC00305Q7Z4B0 112 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 OR5AU1Q8NGC0 362 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 TMEM167BQ9NRX6 74 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 GNG7O60262 68 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 NDUFB8O95169 186 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 MFAP4P55083 255 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 LYZP61626 148 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 BCL6BQ8N143 479 aaPredicted RBP10.51□□□□□ -0.73
HMGB1-202ENST00000339872 TVP23CQ96ET8 276 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 FAM167A-AS1Q96KT0 104 aa10.51□□□□□ -0.73
HMGB1-202ENST00000339872 PDE6DO43924 150 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 IGHV3-23P01764 117 aa10.5□□□□□ -0.73
HMGB1-202ENST00000339872 RHEBQ15382 184 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms