RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 HIGD1CA8MV81 97 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 KIR2DL2P43627 348 aaPredicted RBP13.35□□□□□ -0.27
NPHP3-201ENST00000337331 FAM216BQ8N7L0 139 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 LSM4Q9Y4Z0 139 aaKnown RBP13.35□□□□□ -0.27
NPHP3-201ENST00000337331 C19orf67A6NJJ6 358 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 RPL13AP40429 203 aaKnown RBP13.35□□□□□ -0.27
NPHP3-201ENST00000337331 CX3CL1P78423 397 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 ZIC4Q8N9L1 334 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 C19orf24Q9BVV8 132 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 PAX1P15863 534 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 CKS2P33552 79 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 SRSF9Q13242 221 aaKnown RBP eCLIP13.35□□□□□ -0.27
NPHP3-201ENST00000337331 TWIST1Q15672 202 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 TIMM23BQ5SRD1 257 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 MYOZ3Q8TDC0 251 aa13.35□□□□□ -0.27
NPHP3-201ENST00000337331 SYS1-DBNDD2H3BUS1 97 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 IGFBP2P18065 325 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 FOXG1P55316 489 aaPredicted RBP13.34□□□□□ -0.27
NPHP3-201ENST00000337331 ADAMTSL5Q6ZMM2 481 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 TMEM144Q7Z5S9 345 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 KBTBD11-OT1A0A1B0GTJ5 212 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 IGHV1-2P23083 117 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 TRAV26-1A0A087WT03 109 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 CGB1A6NKQ9 187 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 HBBP68871 147 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 DEFB125Q8N687 156 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 TAX1BP3O14907 124 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 PSG3Q16557 428 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 GOLT1AQ6ZVE7 132 aa13.34□□□□□ -0.27
NPHP3-201ENST00000337331 TBR1Q16650 682 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 TMEM78Q5T7P6 136 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 C18orf32Q8TCD1 76 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 OSTCQ9NRP0 149 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 TRAV24A0A0B4J272 114 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 CRYGSP22914 178 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 GATA2P23769 480 aaPredicted RBP13.33□□□□□ -0.28
NPHP3-201ENST00000337331 MEF2CQ06413 473 aaPredicted RBP13.33□□□□□ -0.28
NPHP3-201ENST00000337331 GUSBP1Q15486 140 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 SFTA2Q6UW10 78 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 GAGE12HA6NDE8 117 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 RNF115Q9Y4L5 304 aa13.33□□□□□ -0.28
NPHP3-201ENST00000337331 APOHP02749 345 aaPredicted RBP13.32□□□□□ -0.28
NPHP3-201ENST00000337331 ZNF138P52744 262 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 TCF24Q7RTU0 167 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 ZNF418Q8TF45 676 aaPredicted RBP13.32□□□□□ -0.28
NPHP3-201ENST00000337331 ZNF524Q96C55 264 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 ETV2O00321 342 aaPredicted RBP13.32□□□□□ -0.28
NPHP3-201ENST00000337331 ATP5IP56385 69 aaPredicted RBP13.32□□□□□ -0.28
NPHP3-201ENST00000337331 MIR17HGQ75NE6 70 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 IGKV1-5P01602 117 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 MFAP4P55083 255 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 HIST1H4GQ99525 98 aa13.32□□□□□ -0.28
NPHP3-201ENST00000337331 TFF1P04155 84 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 LOXL3P58215 753 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 TMEM30BQ3MIR4 351 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 ETDBQ3ZM63 59 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 LINC00305Q7Z4B0 112 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 C17orf82Q86X59 251 aaPredicted RBP13.31□□□□□ -0.28
NPHP3-201ENST00000337331 OSR1Q8TAX0 266 aaPredicted RBP13.31□□□□□ -0.28
NPHP3-201ENST00000337331 MRPL32Q9BYC8 188 aaKnown RBP13.31□□□□□ -0.28
NPHP3-201ENST00000337331 IFI27L2Q9H2X8 130 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 NBEAP1P0C6P0 100 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 PLA2G5P39877 138 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 FAM169BQ8N8A8 192 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 MS4A6AQ9H2W1 248 aa13.31□□□□□ -0.28
NPHP3-201ENST00000337331 IGKV1-27A0A075B6S5 117 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 WISP1O95388 367 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 FRMD6-AS1P0C7T7 363 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 ZNF883P0CG24 379 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 CRYBA4P53673 196 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 RBPMS2Q6ZRY4 209 aaKnown RBP13.3□□□□□ -0.28
NPHP3-201ENST00000337331 MRPL27Q9P0M9 148 aaKnown RBP13.3□□□□□ -0.28
NPHP3-201ENST00000337331 PINLYPA6NC86 204 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 IQCF6A8MYZ5 107 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 C9orf172C9J069 976 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 RAMP3O60896 148 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 SPINK8P0C7L1 97 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 HERVK_113P61574 105 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 NABP1Q96AH0 204 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 FAM106CPP0CH98 169 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 PSMB2P49721 201 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 MORN2Q502X0 79 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 SVIPQ8NHG7 77 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 C9orf118A6NHY6 69 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 IL4P05112 153 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 LINC00271P0C7V0 271 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 RPS20P60866 119 aaKnown RBP13.3□□□□□ -0.28
NPHP3-201ENST00000337331 C9orf106Q8NAJ2 232 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 C18orf15Q96N68 181 aa13.3□□□□□ -0.28
NPHP3-201ENST00000337331 TEX48A0A1B0GUV7 120 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 E9PLN8 166 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 PF4V1P10720 104 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 CD300EQ496F6 205 aaPredicted RBP13.29□□□□□ -0.28
NPHP3-201ENST00000337331 LYRM7Q5U5X0 104 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 SPATA31B1PQ5VZV4 182 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 TP73-AS1Q9UF72 201 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 C22orf46C9J442 243 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 CLPSP04118 112 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
NPHP3-201ENST00000337331 TMEM14EPQ6UXP3 125 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms