RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PRELID3AQ96N28 172 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 UNC80Q8N2C7 3258 aa12.73□□□□□ -0.37
SHH-201ENST00000297261 A0A087X0K7 114 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 A0A1W2PRE2 83 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 RBPMS2Q6ZRY4 209 aaKnown RBP12.72□□□□□ -0.37
SHH-201ENST00000297261 OR52E5Q8NH55 327 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 ORAOV1Q8WV07 137 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 A0A1W2PNU3 283 aaPredicted RBP12.72□□□□□ -0.37
SHH-201ENST00000297261 FOXH1O75593 365 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 Q6ZWC4 215 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 OR4C13Q8NGP0 309 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 ATG2AQ2TAZ0 1938 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 TRAV5A0A0B4J249 113 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 CLEC7AQ9BXN2 247 aa12.72□□□□□ -0.37
SHH-201ENST00000297261 PPIAL4EA0A075B759 164 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 IGKV1-6A0A0C4DH72 117 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 FAM181BA6NEQ2 426 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 PPIAL4FP0DN26 164 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 FOXF2Q12947 444 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 WDR31Q8NA23 367 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 M0QZ24 198 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 PSPNO60542 156 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 SS18L1O75177 396 aaPredicted RBP12.71□□□□□ -0.37
SHH-201ENST00000297261 IGKV1D-33P01593 117 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 IGKV1-33P01594 117 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 CECR9P0C854 216 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 PIP4P1Q86T03 277 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 OR1N2Q8NGR9 330 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 ST20Q9HBF5 79 aa12.71□□□□□ -0.37
SHH-201ENST00000297261 SFTA2Q6UW10 78 aa12.71□□□□□ -0.38
SHH-201ENST00000297261 FOXL2NBQ6ZUU3 175 aa12.71□□□□□ -0.38
SHH-201ENST00000297261 DTX1Q86Y01 620 aa12.71□□□□□ -0.38
SHH-201ENST00000297261 C5orf30Q96GV9 206 aa12.71□□□□□ -0.38
SHH-201ENST00000297261 COX11Q9Y6N1 276 aa12.71□□□□□ -0.38
SHH-201ENST00000297261 PCNX3Q9H6A9 2034 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 DUTP33316 252 aaKnown RBP12.7□□□□□ -0.38
SHH-201ENST00000297261 NTF4P34130 210 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 UCNP55089 124 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 COL6A6A6NMZ7 2263 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 MC5RP33032 325 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 BMI1P35226 326 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 TMPRSS3P57727 454 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 NHP2Q9NX24 153 aaKnown RBP12.7□□□□□ -0.38
SHH-201ENST00000297261 TMEM238LA0A1B0GVL6 79 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 A6NJY4 79 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 HIST1H1AQ02539 215 aaPredicted RBP12.7□□□□□ -0.38
SHH-201ENST00000297261 TMEM42Q69YG0 159 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 LHFPL4Q7Z7J7 247 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 MGST2Q99735 147 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 RNF115Q9Y4L5 304 aa12.7□□□□□ -0.38
SHH-201ENST00000297261 CDH23Q9H251 3354 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 CEACAM3P40198 252 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 CX3CL1P78423 397 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 ZNF585BQ52M93 769 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 NUDT10Q8NFP7 164 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 GAGE12BA1L429 117 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 IL18BPO95998 194 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 ZNF257Q9Y2Q1 563 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 IGHV1-69-2A0A0G2JMI3 117 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 TTC9CQ8N5M4 171 aa12.69□□□□□ -0.38
SHH-201ENST00000297261 ZNF138P52744 262 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 CACNG7P62955 275 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 RELQ04864 619 aaPredicted RBP12.68□□□□□ -0.38
SHH-201ENST00000297261 FAM27E3Q08E93 113 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 OR4A5Q8NH83 315 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 S4R3C0 116 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 MED13Q9UHV7 2174 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 TRAV30A0A087WSZ9 112 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 A0A1W2PS18 150 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 C15orf61A6NNL5 157 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 OR11H12B2RN74 326 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 J3QW42 95 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 IGLC2P0DOY2 106 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 IGLC3P0DOY3 106 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 ATP5IP56385 69 aaPredicted RBP12.68□□□□□ -0.38
SHH-201ENST00000297261 Q6ZVH6 145 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 ZNF114Q8NC26 417 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 OR11H1Q8NG94 326 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 OR11H2Q8NH07 326 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 ZNF418Q8TF45 676 aaPredicted RBP12.68□□□□□ -0.38
SHH-201ENST00000297261 TSKUQ8WUA8 353 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 TRAV3A0A0B4J244 114 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 C9JCJ5 164 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 IL4P05112 153 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 MORN2Q502X0 79 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 FAM216BQ8N7L0 139 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 STPG4Q8N801 248 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 PRSS33Q8NF86 280 aa12.68□□□□□ -0.38
SHH-201ENST00000297261 TRBV20OR9-2A0A075B6H5 130 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 CCL21O00585 134 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 MAJINQ3KP22 176 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 A0A1B0GWJ7 208 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 C15orf62A8K5M9 175 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 ANOS1P23352 680 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 MRPL52Q86TS9 123 aaKnown RBP12.67□□□□□ -0.38
SHH-201ENST00000297261 LINC00479Q96M42 142 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 EPDR1Q9UM22 224 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 ARFGEF3Q5TH69 2177 aa12.67□□□□□ -0.38
SHH-201ENST00000297261 SRSF7Q16629 238 aaKnown RBP eCLIP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms