RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 KIR2DL5AQ8N109 375 aa12.4□□□□□ -0.42
LSM6-201ENST00000296581 FAM210BQ96KR6 192 aa12.4□□□□□ -0.42
LSM6-201ENST00000296581 VSIRQ9H7M9 311 aa12.4□□□□□ -0.42
LSM6-201ENST00000296581 KIAA1456Q9P272 454 aa12.4□□□□□ -0.42
LSM6-201ENST00000296581 FCN1O00602 326 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 HES1Q14469 280 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 TMEM41BQ5BJD5 291 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 PVRIGQ6DKI7 326 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 ACSM6Q6P461 480 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 SPSB3Q6PJ21 355 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 ZNF709Q8N972 641 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 ZNF114Q8NC26 417 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 P2RX4Q99571 388 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 NAV3Q8IVL0 2385 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 TEX22C9J3V5 150 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 BRS3P32247 399 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 SUB1P53999 127 aaKnown RBP eCLIP12.39□□□□□ -0.434e-6■■■□□ 17.5
LSM6-201ENST00000296581 PLGLAQ15195 96 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 C1orf194Q5T5A4 169 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 LFNGQ8NES3 379 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 GSX1Q9H4S2 264 aaPredicted RBP12.39□□□□□ -0.43
LSM6-201ENST00000296581 DNAJC4Q9NNZ3 241 aa12.39□□□□□ -0.43
LSM6-201ENST00000296581 IGHV1-69DA0A0B4J2H0 117 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 IGHV1-69P01742 117 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 ELLP55199 621 aaPredicted RBP12.38□□□□□ -0.43
LSM6-201ENST00000296581 GNB1P62873 340 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 CD69Q07108 199 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 C5orf64Q2M2E5 130 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 SRSF12Q8WXF0 261 aaKnown RBP12.38□□□□□ -0.43
LSM6-201ENST00000296581 MGST2Q99735 147 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 SRSF8Q9BRL6 282 aaKnown RBP12.38□□□□□ -0.43
LSM6-201ENST00000296581 DOPEY2Q9Y3R5 2298 aa12.38□□□□□ -0.43
LSM6-201ENST00000296581 TRAV1-1A0A0B4J248 108 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 IQCJQ1A5X6 159 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 OR1P1Q8NH06 330 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 MBD3L1Q8WWY6 194 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 FAM106CPP0CH98 169 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 GATA3P23771 443 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 OPRK1P41145 380 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 OR5I1Q13606 314 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 ZNF726P1Q15940 193 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 TEPPQ6URK8 271 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 CACNG8Q8WXS5 425 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 MBD6Q96DN6 1003 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 GGTLC1Q9BX51 225 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 TENM4Q6N022 2769 aa12.37□□□□□ -0.43
LSM6-201ENST00000296581 AREGP15514 252 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 LOXL1Q08397 574 aaPredicted RBP12.36□□□□□ -0.43
LSM6-201ENST00000296581 FFAR4Q5NUL3 377 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 C16orf54Q6UWD8 224 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 TMEM144Q7Z5S9 345 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 RARRES2Q99969 163 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 SMDT1Q9H4I9 107 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 TRAV40A0A0B4J280 105 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 HBE1P02100 147 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 FAM120AOSQ5T036 256 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 RUSC1-AS1Q66K80 236 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 ZNF705AQ6ZN79 300 aaPredicted RBP12.36□□□□□ -0.43
LSM6-201ENST00000296581 RPP25LQ8N5L8 163 aaKnown RBP12.36□□□□□ -0.43
LSM6-201ENST00000296581 LINC01356Q8N9X3 169 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 C7orf69Q9H7B7 122 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 HIF1ANQ9NWT6 349 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 ZFP30Q9Y2G7 519 aa12.36□□□□□ -0.43
LSM6-201ENST00000296581 CIDEAO60543 219 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 REG1AP05451 166 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 CCL20P78556 96 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 LEMD1Q68G75 181 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 SSX7Q7RTT5 188 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 SLC35E3Q7Z769 313 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 KCNIP2Q9NS61 270 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.35□□□□□ -0.43
LSM6-201ENST00000296581 CELSR2Q9HCU4 2923 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 MLANAQ16655 118 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 POLQO75417 2590 aa12.35□□□□□ -0.43
LSM6-201ENST00000296581 CNIH1O95406 144 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 MFAP2P55001 183 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 ACOT6Q3I5F7 207 aaPredicted RBP12.34□□□□□ -0.43
LSM6-201ENST00000296581 COA6Q5JTJ3 125 aaKnown RBP12.34□□□□□ -0.43
LSM6-201ENST00000296581 OR10G4Q8NGN3 311 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 OR10G9Q8NGN4 311 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 OR10G7Q8NGN6 311 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 FNDC4Q9H6D8 234 aaPredicted RBP12.34□□□□□ -0.43
LSM6-201ENST00000296581 C1RLQ9NZP8 487 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 VAX2Q9UIW0 290 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 IGHV3OR16-10A0A075B7F0 116 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 A0A1B0GV50 99 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 IGHV4-38-2P0DP08 117 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 RAB31Q13636 194 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 FXYD3Q14802 87 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 Q5PR19 223 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 ZNF562Q6V9R5 426 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 Q8N9W7 124 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 OR4X1Q8NH49 305 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 SSMEM1Q8WWF3 244 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 TVP23CQ96ET8 276 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 SLC35E1Q96K37 410 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 F11RQ9Y624 299 aaKnown RBP12.34□□□□□ -0.43
LSM6-201ENST00000296581 PXMP4Q9Y6I8 212 aa12.34□□□□□ -0.43
LSM6-201ENST00000296581 IGKV1OR2-108A0A075B7D4 117 aa12.33□□□□□ -0.44
LSM6-201ENST00000296581 NCBP2LA6PVI3 153 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms