RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SECTM1Q8WVN6 248 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 MS4A10Q96PG2 267 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SH3BGRL3Q9H299 93 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SMCO4Q9NRQ5 59 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 KCNIP1Q9NZI2 227 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 STRAPQ9Y3F4 350 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 FBXO7Q9Y3I1 522 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 HUWE1Q7Z6Z7 4374 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 BIRC6Q9NR09 4857 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 DUXBA0A1W2PPF3 345 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 PITX3O75364 302 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 NDUFA3O95167 84 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SCTP09683 121 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 PPP1CCP36873 323 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 CRIP2P52943 208 aaPredicted RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 GNMTQ14749 295 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 PEA15Q15121 130 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 GUK1Q16774 197 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 C19orf54Q5BKX5 351 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SPSB3Q6PJ21 355 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 UNQ5815/PRO19632Q6UWF5 114 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 ZNF818PQ6ZRF7 136 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 TBC1D26Q86UD7 250 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 OR52L2PQ8NGH6 319 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 MRPL30Q8TCC3 161 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 YPEL4Q96NS1 127 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 NABP2Q9BQ15 211 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 FAM103A1Q9BTL3 118 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 PARP12Q9H0J9 701 aaKnown RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 FBXL15Q9H469 300 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SAV1Q9H4B6 383 aaPredicted RBP5.99□□□□□ -1.45
CLK1-215ENST00000621181 MLXQ9UH92 298 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 JPT1Q9UK76 154 aa5.99□□□□□ -1.45
CLK1-215ENST00000621181 SAA2-SAA4A0A096LPE2 208 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 FAM24AA6NFZ4 105 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 ZNF98A6NK75 572 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 H0Y980 276 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 RRHO14718 337 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 SAA2P0DJI9 122 aaPredicted RBP5.98□□□□□ -1.45
CLK1-215ENST00000621181 MAS1LP35410 378 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 PAX9P55771 341 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 GAPTQ8N292 157 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 OR2C3Q8N628 320 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 C15orf54Q8N8G6 183 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 LFNGQ8NES3 379 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 IL22RA2Q969J5 263 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 HIST1H2BAQ96A08 127 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 GALMQ96C23 342 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 CLCC1Q96S66 551 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 BIN3Q9NQY0 253 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 ZNF355PQ9NSJ1 428 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 LYRM2Q9NU23 88 aaPredicted RBP5.98□□□□□ -1.45
CLK1-215ENST00000621181 STARD9Q9P2P6 4700 aa5.98□□□□□ -1.45
CLK1-215ENST00000621181 C7orf77A4D0Y5 90 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 FAM229AH3BQW9 127 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 TRGV3P03979 118 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 CTXN2P0C2S0 81 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 PPT1P50897 306 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 POLR2GP62487 172 aaKnown RBP eCLIP5.97□□□□□ -1.45
CLK1-215ENST00000621181 RNF212Q495C1 297 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 AKIRIN2Q53H80 203 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 ZNF833PQ6ZTB9 187 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 PPP1R27Q86WC6 154 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 H1FOOQ8IZA3 346 aaPredicted RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 TMEM252Q8N6L7 170 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 CABLES2Q9BTV7 478 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 SMDT1Q9H4I9 107 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 RETNQ9HD89 108 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 MBNL3Q9NUK0 354 aaKnown RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 RFNGQ9Y644 331 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 FCN1O00602 326 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 YPEL1O60688 119 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 PGLYRP1O75594 196 aaPredicted RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 IGLV2-14P01704 120 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 IFNA4P05014 189 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 EGR2P11161 476 aaPredicted RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 SLC25A6P12236 298 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 ATP6V0CP27449 155 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 NKX2-1P43699 371 aaPredicted RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 CAMLGP49069 296 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 CTAG1AP78358 180 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 CCL20P78556 96 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 HTD2P86397 168 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 LCN12Q6JVE5 192 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 HSD17B11Q8NBQ5 300 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 OR9G4Q8NGQ1 327 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 IL1F10Q8WWZ1 152 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 RHOVQ96L33 236 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 YPEL2Q96QA6 119 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 GPHA2Q96T91 129 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 SPIN2AQ99865 258 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 SPIN2BQ9BPZ2 258 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 FAM110AQ9BQ89 295 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 KRTAP17-1Q9BYP8 105 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 SLC35B3Q9H1N7 401 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 RIMS4Q9H426 269 aaPredicted RBP5.97□□□□□ -1.45
CLK1-215ENST00000621181 CCL28Q9NRJ3 127 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 GAB2Q9UQC2 676 aa5.97□□□□□ -1.45
CLK1-215ENST00000621181 SACSQ9NZJ4 4579 aa5.96□□□□□ -1.46
CLK1-215ENST00000621181 DYNC2H1Q8NCM8 4307 aaKnown RBP5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms