RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 IFNA4P05014 189 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 CTSGP08311 255 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 SLC25A4P12235 298 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 SLC25A6P12236 298 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 FCGR2BP31994 310 aaPredicted RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 MFAP2P55001 183 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 UBE2MP61081 183 aaKnown RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 RAB11AP62491 216 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 PAFAH1B2P68402 229 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TNFRSF9Q07011 255 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMEM187Q14656 261 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 BAK1Q16611 211 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 AARDQ4LEZ3 155 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TM4SF20Q53R12 229 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 NMSQ5H8A3 153 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 BTNL8Q6UX41 500 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 UNQ9165/PRO28630Q6UXU0 137 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 Q6ZRM9 215 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 LINC00299Q6ZSB3 139 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 LYZL2Q7Z4W2 148 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMEM116Q8NCL8 245 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 OR52B4Q8NGK2 314 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 OR4X1Q8NH49 305 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 OR1S1Q8NH92 325 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 COQ8AQ8NI60 647 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 LHFPL5Q8TAF8 219 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMEM190Q8WZ59 177 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMEM230Q96A57 120 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 GPR146Q96CH1 333 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 WDR89Q96FK6 387 aaPredicted RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 OR10C1Q96KK4 312 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 CIB3Q96Q77 187 aaPredicted RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 ASCL2Q99929 193 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 SPAG8Q99932 426 aaPredicted RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 NEURL2Q9BR09 285 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 C7orf50Q9BRJ6 194 aaKnown RBP3.31□□□□□ -1.88
SNX1-205ENST00000559339 CHRDL1Q9BU40 450 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMEM231Q9H6L2 316 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 TMED3Q9Y3Q3 217 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 U3KQK5 164 aa3.31□□□□□ -1.88
SNX1-205ENST00000559339 ELOA3CA0A087WX78 387 aaPredicted RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 A0A0G2JRQ6 117 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 LINC00854A0A1B0GVQ3 168 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 A0A1W2PS18 150 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 IZUMO1RA6ND01 250 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 OR4C46A6NHA9 309 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 ZNF785A8K8V0 405 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 OR11H12B2RN74 326 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 FAM90A26D6RGX4 464 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 F8W735 103 aaPredicted RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 TSPAN4O14817 238 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 CLN5O75503 358 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 NDUFB6O95139 128 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 NXPH3O95157 252 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 SFT2D2O95562 160 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 TMEM50AO95807 157 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 GHRHP01286 108 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 IGHV3-48P01763 117 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 FABP1P07148 127 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 C8orf88P0DMB2 117 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 RNASE2P10153 161 aaKnown RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 IL7P13232 177 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 NPPCP23582 126 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 NPY1RP25929 384 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 ADMP35318 185 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 EIF2B2P49770 351 aaKnown RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 CMC4P56277 68 aaPredicted RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 RPL11P62913 178 aaKnown RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 SUPT4H1P63272 117 aaKnown RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 PPP1R1AQ13522 171 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 BSXQ3C1V8 233 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 C4orf46Q504U0 113 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 C2orf83Q53S99 150 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 ZNF600Q6ZNG1 722 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 SBSPONQ8IVN8 264 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 TMEM61Q8N0U2 210 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 Q8N1Y9 231 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 LRTM2Q8N967 370 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 DTD1Q8TEA8 209 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 Q8WTZ3 238 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 S100ZQ8WXG8 99 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 CACNG8Q8WXS5 425 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 WWC2-AS2Q96NR7 200 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 METTL26Q96S19 204 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 CCDC32Q9BV29 185 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 RHPN1-AS1Q9BWJ2 59 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 PRR13Q9NZ81 148 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 HSPB7Q9UBY9 170 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 MLXQ9UH92 298 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 PFDN2Q9UHV9 154 aa3.3□□□□□ -1.88
SNX1-205ENST00000559339 PAIP2BQ9ULR5 123 aaKnown RBP3.3□□□□□ -1.88
SNX1-205ENST00000559339 PUS1Q9Y606 427 aaKnown RBP eCLIP3.3□□□□□ -1.88
SNX1-205ENST00000559339 CMYA5Q8N3K9 4069 aa3.29□□□□□ -1.88
SNX1-205ENST00000559339 PRKDCP78527 4128 aaKnown RBP3.29□□□□□ -1.88
SNX1-205ENST00000559339 IGHV3OR16-8A0A075B7F1 116 aa3.29□□□□□ -1.88
SNX1-205ENST00000559339 IGHV7-4-1A0A0J9YVY3 117 aa3.29□□□□□ -1.88
SNX1-205ENST00000559339 C9orf170A2RU37 121 aa3.29□□□□□ -1.88
SNX1-205ENST00000559339 DNASE2O00115 360 aaPredicted RBP3.29□□□□□ -1.88
SNX1-205ENST00000559339 WRBO00258 174 aa3.29□□□□□ -1.88
SNX1-205ENST00000559339 CHEK1O14757 476 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms