RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MFAP2P55001 183 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BDP58876 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BCP62807 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST2H2BEQ16778 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.08□□□□□ -0.32
COL4A1-204ENST00000543140 PPP1R27Q86WC6 154 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BHQ93079 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BNQ99877 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 HIST1H2BMQ99879 126 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 AMMECR1Q9Y4X0 333 aaPredicted RBP13.08□□□□□ -0.32
COL4A1-204ENST00000543140 LOC105371242A0A075B767 164 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 LY6LH3BQJ8 138 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 FCN1O00602 326 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 TIMM23O14925 209 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 OR5G3P0C626 314 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 GNLYP22749 145 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 CD24P25063 80 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 TXNDC17Q9BRA2 123 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 CHODLQ9H9P2 273 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 UBTD1Q9HAC8 227 aa13.08□□□□□ -0.32
COL4A1-204ENST00000543140 A0A1W2PPQ1 181 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 S100PP25815 95 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 COMPP49747 757 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-204ENST00000543140 PLGLAQ15195 96 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 FRZBQ92765 325 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 ANAPC16Q96DE5 110 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 UHRF2Q96PU4 802 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 IGKV1D-37A0A075B6S9 117 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 LHFPL4Q7Z7J7 247 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 SLC25A33Q9BSK2 321 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 DNAJC4Q9NNZ3 241 aa13.07□□□□□ -0.32
COL4A1-204ENST00000543140 HTR1DP28221 377 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 DTX2Q86UW9 622 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 OCC1Q8TAD7 63 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 PSMB11A5LHX3 300 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 TRGC1P0CF51 173 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 RD3LP0DJH9 198 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 FAM3BP58499 235 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-204ENST00000543140 TPTE2P1Q5T6R2 138 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 ITLN2Q8WWU7 325 aaPredicted RBP13.06□□□□□ -0.32
COL4A1-204ENST00000543140 TMEM167BQ9NRX6 74 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 CACNA1AO00555 2505 aa13.06□□□□□ -0.32
COL4A1-204ENST00000543140 TCRBV4S1A1TA0A5B7 111 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 MOSP00540 346 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 TAS2R45P59539 299 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 PQLC2Q6ZP29 291 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 OR4X1Q8NH49 305 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 C19orf24Q9BVV8 132 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 NIT2Q9NQR4 276 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 CSMD1Q96PZ7 3565 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 C19orf84I3L1E1 186 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 COX7A2P2O60397 106 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 SNRPCP09234 159 aaKnown RBP13.05□□□□□ -0.32
COL4A1-204ENST00000543140 C8orf88P0DMB2 117 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 DPM3Q9P2X0 92 aa13.05□□□□□ -0.32
COL4A1-204ENST00000543140 CRYBB3P26998 211 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 GPR6P46095 362 aaPredicted RBP13.04□□□□□ -0.32
COL4A1-204ENST00000543140 MMDQ15546 238 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 PATE2Q6UY27 113 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 SLC25A2Q9BXI2 301 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 TEX22C9J3V5 150 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 C10orf113Q5VZT2 155 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 MRPL41Q8IXM3 137 aaKnown RBP13.04□□□□□ -0.32
COL4A1-204ENST00000543140 OR5AU1Q8NGC0 362 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 OR11H6Q8NGC7 330 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 SRSF12Q8WXF0 261 aaKnown RBP13.04□□□□□ -0.32
COL4A1-204ENST00000543140 SFRP2Q96HF1 295 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 FAM167A-AS1Q96KT0 104 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 GSX1Q9H4S2 264 aaPredicted RBP13.04□□□□□ -0.32
COL4A1-204ENST00000543140 TNFRSF19Q9NS68 423 aa13.04□□□□□ -0.32
COL4A1-204ENST00000543140 SVEP1Q4LDE5 3571 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 A0A0U1RQK1 487 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 GGTLC3B5MD39 225 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 CNIH1O95406 144 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 PYYP10082 97 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 ZFP36P26651 326 aaKnown RBP13.03□□□□□ -0.32
COL4A1-204ENST00000543140 SUMO1P63165 101 aaKnown RBP13.03□□□□□ -0.32
COL4A1-204ENST00000543140 GFI1BQ5VTD9 330 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 THAP8Q8NA92 274 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 OR2T10Q8NGZ9 312 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 PYGO2Q9BRQ0 406 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 ZNF355PQ9NSJ1 428 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 CFAP46Q8IYW2 2715 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 PPP5D1E7EU14 171 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 ORM2P19652 201 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 HOXA5P20719 270 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 UBE2L3P68036 154 aaKnown RBP13.03□□□□□ -0.32
COL4A1-204ENST00000543140 SSX2Q16385 188 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 FBLN7Q53RD9 439 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 DMRT1Q9Y5R6 373 aa13.03□□□□□ -0.32
COL4A1-204ENST00000543140 MDFIC2A0A1B0GVS7 189 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 K7EN84 100 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 PDZD11Q5EBL8 140 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 OR1P1Q8NH06 330 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 C11orf52Q96A22 123 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 MRPL32Q9BYC8 188 aaKnown RBP13.02□□□□□ -0.32
COL4A1-204ENST00000543140 SRD5A3Q9H8P0 318 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 GSN-AS1Q9NRJ2 163 aa13.02□□□□□ -0.32
COL4A1-204ENST00000543140 M0R1W7 72 aa13.02□□□□□ -0.33
COL4A1-204ENST00000543140 PHOX2AO14813 284 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms