RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 LYL1P12980 280 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 CNN1P51911 297 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 RAB40BQ12829 278 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 DEFB112Q30KQ8 113 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 VMO1Q7Z5L0 202 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 KIR2DL5AQ8N109 375 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 FBLIM1Q8WUP2 373 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 SPSB4Q96A44 273 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 BORCS7Q96B45 105 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 IGKV1D-17A0A075B6S4 117 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 TEX48A0A1B0GUV7 120 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 GABARAPH6UMI1 98 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 BMPR1BO00238 502 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 CD3DP04234 171 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 IL5P05113 134 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 MGST1P10620 155 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 CDK2P24941 298 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 PPP1CCP36873 323 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 TNXAQ16473 311 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 Q56UQ5 140 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 C10orf91Q5T1B1 145 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 C11orf53Q8IXP5 236 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 CD177Q8N6Q3 437 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 OR4B1Q8NGF8 309 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 MBD3L1Q8WWY6 194 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 BORCS7-ASMTA0A0B4J1R7 106 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM157CP0CG43 387 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 HOXB4P17483 251 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 HOXB6P17509 224 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 SNRPGP62308 76 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 GLIPR1L1Q6UWM5 242 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 KCNG3Q8TAE7 436 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 HES4Q9HCC6 221 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 FBXL17Q9UF56 701 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 GPR132Q9UNW8 380 aa6.45□□□□□ -1.38
LIMCH1-219ENST00000514096 MUC21A0A0G2JKD1 596 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 MUC21A0A140T8X8 626 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 FAM24AA6NFZ4 105 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 MSGN1A6NI15 193 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 PSPNO60542 156 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 IGHV4-59P01825 116 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 HLA-DRB3P79483 266 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 MZT1Q08AG7 82 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 KRTAP24-1Q3LI83 254 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 MUC21Q5SSG8 566 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 AURKAIP1Q9NWT8 199 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 PEF1Q9UBV8 284 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 NAT8Q9UHE5 227 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 POLDIP2Q9Y2S7 368 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 RAB27BO00194 218 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 HYPMO75409 117 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 SRPXP78539 464 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 FOXL1Q12952 345 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 OXLD1Q5BKU9 147 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 OR5A2Q8NGI9 324 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 GALMQ96C23 342 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 GPR146Q96CH1 333 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 KCNIP1Q9NZI2 227 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 FBLN5Q9UBX5 448 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 PKD1L1Q8TDX9 2849 aa6.44□□□□□ -1.38
LIMCH1-219ENST00000514096 IGKV1-12A0A0C4DH73 117 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 TMEM272A0A1B0GTI8 110 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 J3QT63 122 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 FGF16O43320 207 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 IGKV1D-12P01611 117 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 PAX1P15863 534 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 PI3P19957 117 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 ROM1Q03395 351 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 CDK5R1Q15078 307 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 PRSS8Q16651 343 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 SMIM8Q96KF7 97 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 C20orf144Q9BQM9 153 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 NDFIP1Q9BT67 221 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 RPUSD1Q9UJJ7 312 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 SORL1Q92673 2214 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 VWC2LB2RUY7 222 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 F5H768 121 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 PRTN3P24158 256 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 TSPOP30536 169 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 GALR1P47211 349 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 C3orf36Q3SXR2 165 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 UTF1Q5T230 341 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 ACP7Q6ZNF0 438 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 KIR3DL3Q8N743 410 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 RAB40CQ96S21 281 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 C1QTNF4Q9BXJ3 329 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 TRAV8-6A0A0B4J262 113 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 SPINK4O60575 86 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 TOMM40O96008 361 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 FCGR2CP31995 323 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 SSTR5P35346 364 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 MTNR1BP49286 362 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 FUT6P51993 359 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 DHRS2Q13268 280 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 CD300EQ496F6 205 aaPredicted RBP6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 TTC32Q5I0X7 151 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 OR51T1Q8NGJ9 327 aa6.43□□□□□ -1.38
LIMCH1-219ENST00000514096 PGLYRP3Q96LB9 341 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms