RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C1orf158Q8N1D5 194 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CLDN22Q8N7P3 220 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 PFN4Q8NHR9 129 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 BORCS7Q96B45 105 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CEP19Q96LK0 163 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CCDC94Q9BW85 323 aaPredicted RBP0.71□□□□□ -2.3
VPS50-219ENST00000495039 TRIM4Q9C037 500 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 NMNAT1Q9HAN9 279 aaPredicted RBP0.71□□□□□ -2.3
VPS50-219ENST00000495039 PRTFDC1Q9NRG1 225 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CMTM6Q9NX76 183 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CCDC88BA6NC98 1476 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 ERCC6Q03468 1493 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CEP164Q9UPV0 1460 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 FHAD1B1AJZ9 1412 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 RIC1Q4ADV7 1423 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 MUC5BQ9HC84 5762 aaPredicted RBP0.71□□□□□ -2.3
VPS50-219ENST00000495039 TNRC6BQ9UPQ9 1833 aaKnown RBP0.71□□□□□ -2.3
VPS50-219ENST00000495039 NCAPD3P42695 1498 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 SNAPC4Q5SXM2 1469 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ZCCHC6Q5VYS8 1495 aaKnown RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 TRBV6-7A0A0A0MS04 114 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 TGIF2-C20orf24A0A0A6YYL0 155 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 PQLC2LA1A4F0 135 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 KPNA3O00505 521 aaPredicted RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 SULT1B1O43704 296 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 CRYZL1O95825 349 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 HLA-DRB1P01911 266 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 IFNA6P05013 189 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ASAH2BP0C7U1 165 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 SPI1P17947 270 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 HIST1H3AP68431 136 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 CCL7P80098 99 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 H3F3AP84243 136 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ACOT6Q3I5F7 207 aaPredicted RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 KHDC3LQ587J8 217 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 SPANXN5Q5MJ07 72 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 LPCAT3Q6P1A2 487 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 DPPA3Q6W0C5 159 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 PHF13Q86YI8 300 aaPredicted RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 CLVS1Q8IUQ0 354 aaPredicted RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 OR6V1Q8N148 313 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ANKRD29Q8N6D5 301 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 OR4E2Q8NGC2 313 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 OR13C4Q8NGS5 318 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 DNAJC9Q8WXX5 260 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 PHB2Q99623 299 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 KIFC1Q9BW19 673 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 PARD6GQ9BYG4 376 aaPredicted RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 CCDC90BQ9GZT6 254 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 FBXL12Q9NXK8 326 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 IL20Q9NYY1 176 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 GLTPQ9NZD2 209 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 STOML2Q9UJZ1 356 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 FBXO5Q9UKT4 447 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ABCC8Q09428 1581 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 MROH2BQ7Z745 1585 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 RB1CC1Q8TDY2 1594 aa0.7□□□□□ -2.3
VPS50-219ENST00000495039 ROCK2O75116 1388 aaKnown RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 KTN1Q86UP2 1357 aaKnown RBP0.7□□□□□ -2.3
VPS50-219ENST00000495039 DCAF1Q9Y4B6 1507 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 RP1P56715 2156 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 GOLGA3Q08378 1498 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 RAPGEF2Q9Y4G8 1499 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 A0A0D9SG52 128 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 PIRO00625 290 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 CHP2O43745 196 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 OR2B3O76000 313 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 SERPINA1P01009 418 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 IFNA10P01566 189 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 TCRBP04435 133 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 CTSDP07339 412 aaPredicted RBP0.69□□□□□ -2.3
VPS50-219ENST00000495039 CTXN2P0C2S0 81 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 CRYGAP11844 174 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 HSD11B1P28845 292 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 LSM6P62312 80 aaKnown RBP0.69□□□□□ -2.3
VPS50-219ENST00000495039 SNRPD2P62316 118 aaKnown RBP0.69□□□□□ -2.3
VPS50-219ENST00000495039 ARF6P62330 175 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 LIN52Q52LA3 116 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 TMEM97Q5BJF2 176 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 Q6ZQT0 140 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 MIR17HGQ75NE6 70 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 KRT222Q8N1A0 295 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 TMEM86BQ8N661 226 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 DCSTAMPQ9H295 470 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 TP73-AS1Q9UF72 201 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 ARL5AQ9Y689 179 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 FMN1Q68DA7 1419 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 PRG4Q92954 1404 aaPredicted RBP0.69□□□□□ -2.3
VPS50-219ENST00000495039 SCAPERQ9BY12 1400 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 NOTCH1P46531 2555 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 EIF3AQ14152 1382 aaKnown RBP0.69□□□□□ -2.3
VPS50-219ENST00000495039 ALPK2Q86TB3 2170 aa0.69□□□□□ -2.3
VPS50-219ENST00000495039 EXPH5Q8NEV8 1989 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 FANCD2Q9BXW9 1451 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 TRAV9-1A0A075B6T8 112 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 HFM1A2PYH4 1435 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 CCDC144AA2RUR9 1427 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 DPRXA6NFQ7 191 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 SMIM9A6NGZ8 99 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 OR4C46A6NHA9 309 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms