RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 OR2T8A6NH00 312 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 WRBO00258 174 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 IGHV3-48P01763 117 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 POLR2GP62487 172 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS13D-204ENST00000469054 RPP30P78346 268 aaKnown RBP9.14□□□□□ -0.95
VPS13D-204ENST00000469054 MLANAQ16655 118 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 C9orf66Q5T8R8 295 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 ACSM6Q6P461 480 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 SPSB3Q6PJ21 355 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 GSG1LQ6UXU4 331 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 OR9G4Q8NGQ1 327 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 C2orf50Q96LR7 162 aa9.14□□□□□ -0.95
VPS13D-204ENST00000469054 NOTCH3Q9UM47 2321 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 J3QL48 77 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 NUPL2O15504 423 aaKnown RBP9.13□□□□□ -0.95
VPS13D-204ENST00000469054 SCGB1D2O95969 90 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 IFNA4P05014 189 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 CTSGP08311 255 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 ADMP35318 185 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 NPBWR1P48145 328 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 INSL3P51460 131 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 RAB11AP62491 216 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 RGS21Q2M5E4 152 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 FAM106AQ4KMX7 169 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 ETFRF1Q6IPR1 90 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 OR4X1Q8NH49 305 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 CHRDL1Q9BU40 450 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 ELOVL1Q9BW60 279 aa9.13□□□□□ -0.95
VPS13D-204ENST00000469054 C7orf66A4D0T2 115 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 C15orf62A8K5M9 175 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 LGALS9O00182 355 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 WIPF1O43516 503 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 SSSCA1O60232 199 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 GNG7O60262 68 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 MBPP02686 304 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 SLC25A4P12235 298 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 CD69Q07108 199 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 IL15RAQ13261 267 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 BEAN1Q3B7T3 259 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 SPANXN5Q5MJ07 72 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 KPRPQ5T749 579 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 REC114Q7Z4M0 266 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 SMIM8Q96KF7 97 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 OR4C12Q96R67 309 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 RAB40CQ96S21 281 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 ZNF436Q9C0F3 470 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 PSENENQ9NZ42 101 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 MRPL36Q9P0J6 103 aaKnown RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 PEMTQ9UBM1 199 aa9.12□□□□□ -0.95
VPS13D-204ENST00000469054 PAIP2BQ9ULR5 123 aaKnown RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 RCL1Q9Y2P8 373 aaKnown RBP9.12□□□□□ -0.95
VPS13D-204ENST00000469054 IGHV3-35A0A0C4DH35 117 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 ZNF320A2RRD8 509 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 GOSR2O14653 212 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 SSNA1O43805 119 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 SAP30O75446 220 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 CLN5O75503 358 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 TMEM50AO95807 157 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 GPX4P36969 197 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-204ENST00000469054 PAX9P55771 341 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 RELQ04864 619 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-204ENST00000469054 OXA1LQ15070 435 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 PRSS54Q6PEW0 395 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 IL34Q6ZMJ4 242 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 TMEM116Q8NCL8 245 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 STRAPQ9Y3F4 350 aaKnown RBP9.11□□□□□ -0.95
VPS13D-204ENST00000469054 VWFP04275 2813 aa9.11□□□□□ -0.95
VPS13D-204ENST00000469054 H3BP45 60 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 K7EPK0 472 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 NDUFA4O00483 81 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 SIX6O95475 246 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 CSN3P07498 182 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 RND2P52198 227 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 TAS2R30P59541 319 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 EGFEM1PQ0D2K5 195 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 UNQ9165/PRO28630Q6UXU0 137 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 SLC16A13Q7RTY0 426 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 CACNG8Q8WXS5 425 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 SIGLEC8Q9NYZ4 499 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 LSM5Q9Y4Y9 91 aaKnown RBP9.1□□□□□ -0.95
VPS13D-204ENST00000469054 ALG5Q9Y673 324 aa9.1□□□□□ -0.95
VPS13D-204ENST00000469054 TRAV30A0A087WSZ9 112 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 TMEM213A2RRL7 107 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 C2orf70A6NJV1 201 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 A8MWP6 167 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 L7N2F9 121 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 TSC22D2O75157 780 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 SCGB2A1O75556 95 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 KRTAP10-11P60412 298 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 VAMP2P63027 116 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 CYCSP99999 105 aaKnown RBP9.09□□□□□ -0.95
VPS13D-204ENST00000469054 RAB32Q13637 225 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 TMEM190Q8WZ59 177 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 NPIPB3Q92617 1050 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 ACY3Q96HD9 319 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 ZNF414Q96IQ9 312 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 NMES1Q9C002 83 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 ZMAT5Q9UDW3 170 aaKnown RBP9.09□□□□□ -0.95
VPS13D-204ENST00000469054 UFC1Q9Y3C8 167 aa9.09□□□□□ -0.95
VPS13D-204ENST00000469054 PMS2P5A8MQ11 134 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms