RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TREML4Q6UXN2 200 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 TOMM20LQ6UXN7 152 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 LRTM2Q8N967 370 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 FLVCR2Q9UPI3 526 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 MDC1Q14676 2089 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 UBE2BP63146 152 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 BAK1Q16611 211 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 NRG4Q8WWG1 115 aa7.56□□□□□ -1.2
LIMCH1-202ENST00000381753 IGHV3-73A0A0B4J1V6 119 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 SRRM5B3KS81 715 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 UBE2V2Q15819 145 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 SELENOHQ8IZQ5 122 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 LPAR5Q9H1C0 372 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 SIGLEC8Q9NYZ4 499 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 KCNE5Q9UJ90 142 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 HSPB8Q9UJY1 196 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 KIAA1671Q9BY89 1806 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 ANKRD20A5PA0PJZ0 165 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 H3BRM9 83 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 PGLYRP1O75594 196 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 FLVCR1-AS1Q8TAF5 88 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 GAFA1Q96PS6 74 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 IGKV1OR2-108A0A075B7D4 117 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 PVRIGQ6DKI7 326 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 CYP2G1PQ6ZSU1 146 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 NUDT11Q96G61 164 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 PRR25Q96S07 402 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 RNF5Q99942 180 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 IGKV3D-20A0A0C4DH25 116 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 DUXBA0A1W2PPF3 345 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 SHISA3A0PJX4 238 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 ATP5IP56385 69 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 HIST3H3Q16695 136 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 LHFPL4Q7Z7J7 247 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 MEGF9Q9H1U4 602 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 TRAV24A0A0B4J272 114 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM238LA0A1B0GVL6 79 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 A6NJY4 79 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 SLC25A20O43772 301 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 CKS2P33552 79 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 C11orf87Q6NUJ2 197 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 C2CD4CQ8TF44 421 aa7.55□□□□□ -1.2
LIMCH1-202ENST00000381753 C19orf84I3L1E1 186 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 IGHV4-38-2P0DP08 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 HGFACQ04756 655 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 EGR4Q05215 589 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 DEFB136Q30KP8 78 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 C4orf48Q5BLP8 95 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 PET117Q6UWS5 81 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 NDUFA11Q86Y39 141 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 Q8NA96 180 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 SMIM4Q8WVI0 70 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 KLK15Q9H2R5 256 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 IFI27L2Q9H2X8 130 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 HIVEP2P31629 2446 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 NBASA2RRP1 2371 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 TRAV21A0A0B4J279 112 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 C11orf94C9JXX5 98 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 F8WEM9 126 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 YPEL1O60688 119 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 IGF2P01344 180 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 C1QBP02746 253 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 JUNBP17275 347 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 SRSF2Q01130 221 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GUK1Q16774 197 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM37Q8WXS4 190 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 YPEL2Q96QA6 119 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 B4DEV8 164 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 CLDN34H7C241 214 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 M0R143 59 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 ATP6V0E1O15342 81 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 MBPP02686 304 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 SPART-AS1P0CW21 52 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 MSRB3Q8IXL7 192 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 STPG2Q8N412 459 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 RNF125Q96EQ8 232 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 SIGLEC9Q9Y336 463 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GAGE12BA1L429 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM218A2RU14 115 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GAGE7O76087 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GAGE12FP0CL80 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GAGE12GP0CL81 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 GAGE12IP0CL82 117 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 PPP1R1AQ13522 171 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM183BQ1AE95 376 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 FOXB2Q5VYV0 432 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 HOGA1Q86XE5 327 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 PRR13Q9NZ81 148 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 FRMPD3Q5JV73 1810 aa7.54□□□□□ -1.2
LIMCH1-202ENST00000381753 IGKV1D-12P01611 117 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 DOCK8Q8NF50 2099 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 A0A1W2PP11 408 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 CNTFRP26992 372 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 ANXA2RQ3ZCQ2 193 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 OR10G8Q8NGN5 311 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 IGF2BP2-AS1Q96M15 143 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM204Q9BSN7 226 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 TDGF1P3P51864 188 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 TMEM183AQ8IXX5 376 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 PPP1R3EQ9H7J1 279 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms