RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ELLP55199 621 aaPredicted RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 LY6EQ16553 131 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 COMMD1Q8N668 190 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 THAP8Q8NA92 274 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 TMEM116Q8NCL8 245 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 LFNGQ8NES3 379 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 OR5R1Q8NH85 324 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 NARS2Q96I59 477 aaKnown RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 SLC45A2Q9UMX9 530 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 TRAV1-1A0A0B4J248 108 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 I3L2K1 104 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 CYB5BO43169 146 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 TSPAN15O95858 294 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 MT-CO2P00403 227 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 IER3P46695 156 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 RAB2AP61019 212 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PRR20EP86478 221 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PRR20CP86479 221 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PRR20DP86480 221 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PRR20BP86481 221 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PRR20AP86496 221 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 BTN1A1Q13410 526 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 KLK9Q2XQG4 91 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 ACOT6Q3I5F7 207 aaPredicted RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 RPP25LQ8N5L8 163 aaKnown RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 MBD3L1Q8WWY6 194 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 ACY3Q96HD9 319 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 RCC1LQ96I51 464 aaKnown RBP11.12□□□□□ -0.63
SS18-201ENST00000269137 KLK9Q9UKQ9 250 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 PXMP4Q9Y6I8 212 aa11.12□□□□□ -0.63
SS18-201ENST00000269137 ZFHX3Q15911 3703 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 BTBD17A6NE02 478 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 ATP6V0E1O15342 81 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 YIF1AO95070 293 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 CRIP2P52943 208 aaPredicted RBP11.11□□□□□ -0.63
SS18-201ENST00000269137 KRTAP1-1Q07627 177 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 AKIRIN2Q53H80 203 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 MIC13Q5XKP0 118 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 STPG3Q8N7X2 389 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 C22orf15Q8WYQ4 148 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 NPIPB3Q92617 1050 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 FANCD2OSQ96PS1 177 aa11.11□□□□□ -0.63
SS18-201ENST00000269137 MRPL36Q9P0J6 103 aaKnown RBP11.11□□□□□ -0.63
SS18-201ENST00000269137 IGLV11-55A0A075B6I3 123 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 K7EIM0 57 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 CD5LO43866 347 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 IGHV4-59P01825 116 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 HBE1P02100 147 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 OR10J1P30954 320 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 RND2P52198 227 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 B2MP61769 119 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 SRSF3P84103 164 aaKnown RBP11.1□□□□□ -0.63
SS18-201ENST00000269137 ZNF726P1Q15940 193 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 SPSB3Q6PJ21 355 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 ATRAIDQ6UW56 229 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 Q6YL49 198 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 OR10G4Q8NGN3 311 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 OR10G9Q8NGN4 311 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 OR10G7Q8NGN6 311 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 FAM110DQ8TAY7 271 aaPredicted RBP11.1□□□□□ -0.63
SS18-201ENST00000269137 SLC39A9Q9NUM3 307 aa11.1□□□□□ -0.63
SS18-201ENST00000269137 SONP18583 2426 aaKnown RBP11.1□□□□□ -0.63
SS18-201ENST00000269137 SH2D7A6NKC9 451 aaPredicted RBP11.09□□□□□ -0.63
SS18-201ENST00000269137 LINC01548A6NM66 108 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 SEC14L6B5MCN3 397 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 LINC00869P0C866 280 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 DEFA5Q01523 94 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 C10orf91Q5T1B1 145 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 UNQ5815/PRO19632Q6UWF5 114 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 SFT2D1Q8WV19 159 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 TMUB1Q9BVT8 246 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 ACTR3CQ9C0K3 210 aaPredicted RBP11.09□□□□□ -0.63
SS18-201ENST00000269137 IGKV1D-37A0A075B6S9 117 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 IGHV3-48P01763 117 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 IGHG2P01859 326 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 HIST1H1BP16401 226 aaKnown RBP11.09□□□□□ -0.63
SS18-201ENST00000269137 SELENOTP62341 195 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 CYP2G1PQ6ZSU1 146 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 OR5T1Q8NG75 326 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 OR4X1Q8NH49 305 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 ZNF48Q96MX3 618 aaPredicted RBP11.09□□□□□ -0.63
SS18-201ENST00000269137 TRGV9Q99603 122 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 TREM1Q9NP99 234 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 THYN1Q9P016 225 aa11.09□□□□□ -0.63
SS18-201ENST00000269137 TCRBV4S1A1TA0A5B7 111 aa11.08□□□□□ -0.64
SS18-201ENST00000269137 IGF1P05019 195 aa11.08□□□□□ -0.64
SS18-201ENST00000269137 ADCYAP1P18509 176 aa11.08□□□□□ -0.64
SS18-201ENST00000269137 C19orf54Q5BKX5 351 aa11.08□□□□□ -0.64
SS18-201ENST00000269137 CARHSP1Q9Y2V2 147 aaKnown RBP11.08□□□□□ -0.64
SS18-201ENST00000269137 ZFP92A6NM28 416 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 ECSCRQ19T08 205 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 GCSAMLQ5JQS6 135 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 SSX7Q7RTT5 188 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 NKX6-2Q9C056 277 aaPredicted RBP11.07□□□□□ -0.64
SS18-201ENST00000269137 TMEM231Q9H6L2 316 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 TNFRSF19Q9NS68 423 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 IGHV3-21A0A0B4J1V1 117 aa11.07□□□□□ -0.64
SS18-201ENST00000269137 MAP1LC3B2A6NCE7 125 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms