RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CCL1P22362 96 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 SIGLEC15Q6ZMC9 328 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 OR5P3Q8WZ94 311 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 TMEM126AQ9H061 195 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 PILRBQ9UKJ0 227 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FOXS1O43638 330 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 EPDR1Q9UM22 224 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 LEPROTO15243 131 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 ESDP10768 282 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 HOXB1P14653 301 aaPredicted RBP9.59□□□□□ -0.87
PTPN4-201ENST00000263708 CD300EQ496F6 205 aaPredicted RBP9.59□□□□□ -0.87
PTPN4-201ENST00000263708 RNASE7Q9H1E1 156 aaKnown RBP9.59□□□□□ -0.87
PTPN4-201ENST00000263708 ZNF236Q9UL36 1845 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 A0A1W2PPV9 198 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 FABP5P3A8MUU1 101 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 SLC22A18ASQ8N1D0 253 aa9.59□□□□□ -0.87
PTPN4-201ENST00000263708 SLC25A47Q6Q0C1 308 aa9.59□□□□□ -0.88
PTPN4-201ENST00000263708 EP300Q09472 2414 aaPredicted RBP9.59□□□□□ -0.88
PTPN4-201ENST00000263708 EREGO14944 169 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 ERCC8Q13216 396 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 DMRT1Q9Y5R6 373 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 CLPSP04118 112 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 LILRA6Q6PI73 481 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 PLA2G10O15496 165 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 MIR17HGQ75NE6 70 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 XIRP1Q702N8 1843 aaKnown RBP9.58□□□□□ -0.88
PTPN4-201ENST00000263708 SDK2Q58EX2 2172 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 NBR2O15453 112 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 GATA2P23769 480 aaPredicted RBP9.58□□□□□ -0.88
PTPN4-201ENST00000263708 ANXA2RQ3ZCQ2 193 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.58□□□□□ -0.887e-7■■■■■ 32.8
PTPN4-201ENST00000263708 TMEM8BA6NDV4 472 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 RHOGP84095 191 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 TMEM187Q14656 261 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 ORMDL2Q53FV1 153 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 SNHG12Q9BXW3 62 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 OTORQ9NRC9 128 aa9.58□□□□□ -0.88
PTPN4-201ENST00000263708 SCN4AP35499 1836 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 CD5LO43866 347 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 COX6A1P12074 109 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 TIMM23BQ5SRD1 257 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 GAGE2AQ6NT46 116 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 UCP3P55916 312 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 C6orf226Q5I0X4 101 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 Q6ZT83 130 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 NDUFS8O00217 210 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 SP9P0CG40 484 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 WDYHV1Q96HA8 205 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 LOC102723996A0A087X1L8 192 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 TMEM238C9JI98 176 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 GREB1Q4ZG55 1949 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 LOC101059948A0A1B0GTJ6 334 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 UMODP07911 640 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 OSR1Q8TAX0 266 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-201ENST00000263708 SPSB2Q99619 263 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 Q96M66 194 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 LAGE3Q14657 143 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 ZNF660Q6AZW8 331 aaPredicted RBP9.57□□□□□ -0.88
PTPN4-201ENST00000263708 SLC50A1Q9BRV3 221 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 H3BMM0 161 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 GLRXP35754 106 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 GAGE13Q4V321 117 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 UBE2WQ96B02 151 aa9.57□□□□□ -0.88
PTPN4-201ENST00000263708 TRAV40A0A0B4J280 105 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 SAMD5Q5TGI4 173 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 ASPHD2Q6ICH7 369 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 C3orf56Q8N813 242 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 FAM216BQ8N7L0 139 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 GAGE2BQ13066 116 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 CRIM1Q9NZV1 1036 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 ATP5IP56385 69 aaPredicted RBP9.56□□□□□ -0.88
PTPN4-201ENST00000263708 ZNF474Q6S9Z5 364 aaPredicted RBP9.56□□□□□ -0.88
PTPN4-201ENST00000263708 LHFPL4Q7Z7J7 247 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 IMMP1LQ96LU5 166 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 HAPLN4Q86UW8 402 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 ATP5G3P48201 142 aa9.56□□□□□ -0.88
PTPN4-201ENST00000263708 RCC1LQ96I51 464 aaKnown RBP9.56□□□□□ -0.88
PTPN4-201ENST00000263708 NHSL1Q5SYE7 1610 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 ACTL10Q5JWF8 245 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 PAX8Q06710 450 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 THAP8Q8NA92 274 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 NCR2O95944 276 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 TRAV5A0A0B4J249 113 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 ZP1P60852 638 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 UBR3Q6ZT12 1888 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 LINC00587B1AMM8 73 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 LIMS2Q7Z4I7 341 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 C2orf82Q6UX34 121 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 ATP5L2Q7Z4Y8 100 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 FOXL1Q12952 345 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 SIGLEC12Q96PQ1 595 aa9.55□□□□□ -0.88
PTPN4-201ENST00000263708 DNAJC30Q96LL9 226 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 PSME4Q14997 1843 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 C17orf98A8MV24 154 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 CECR9P0C854 216 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 SS18Q15532 418 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 C8orf82Q6P1X6 216 aaPredicted RBP9.54□□□□□ -0.88
PTPN4-201ENST00000263708 TRAV8-3A0A0A6YYJ7 113 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 TEX43Q6ZNM6 134 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 TMEM219Q86XT9 240 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms