RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TMEM183BQ1AE95 376 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 OR10J3Q5JRS4 329 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 C10orf113Q5VZT2 155 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 MRPL54Q6P161 138 aaKnown RBP15.16■□□□□ 0.02
CPSF3-201ENST00000238112 ZNF355PQ9NSJ1 428 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 OTOGLQ3ZCN5 2332 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PPIAL4EA0A075B759 164 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PPIAL4DF5H284 164 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 C16orf97H3BN30 126 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PPIAL4FP0DN26 164 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 WT1-ASQ06250 92 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 KIAA1644Q3SXP7 199 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 ZNF705AQ6ZN79 300 aaPredicted RBP15.15■□□□□ 0.02
CPSF3-201ENST00000238112 NHLRC2Q8NBF2 726 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 VN1R17PQ8TDU5 208 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 FAM103A1Q9BTL3 118 aaKnown RBP15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PAXXQ9BUH6 204 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PPIAL4AQ9Y536 164 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 K7EM74 188 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 TCAPO15273 167 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 HLA-DQA1P01909 254 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 NPIPB3Q92617 1050 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 TMEM186Q96B77 213 aa15.15■□□□□ 0.02
CPSF3-201ENST00000238112 AMMECR1Q9Y4X0 333 aaPredicted RBP15.15■□□□□ 0.02
CPSF3-201ENST00000238112 PYYP10082 97 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 C10orf55Q5SWW7 151 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 FAM71F2Q6NXP2 309 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 VAMP8Q9BV40 100 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 FNDC4Q9H6D8 234 aaPredicted RBP15.14■□□□□ 0.01
CPSF3-201ENST00000238112 ZNF586Q9NXT0 402 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 TCRBV4S1A1TA0A5B7 111 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 NDUFB3O43676 98 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 GPX1P07203 203 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 LRRC10Q5BKY1 277 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 CCL17Q92583 94 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 LINC00479Q96M42 142 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 C20orf144Q9BQM9 153 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 WASHC3Q9Y3C0 194 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 PAM16Q9Y3D7 125 aa15.14■□□□□ 0.01
CPSF3-201ENST00000238112 IZUMO1RA6ND01 250 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 DPRXA6NFQ7 191 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 TMEM178BH3BS89 294 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 IGHV3-48P01763 117 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 RAB4AP20338 218 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 DIAPH2-AS1Q14236 149 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 TDRG1Q3Y452 100 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 KCNS1Q96KK3 526 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 ATG101Q9BSB4 218 aa15.13■□□□□ 0.01
CPSF3-201ENST00000238112 CGB1A6NKQ9 187 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 ZNF253O75346 499 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 FCN3O75636 299 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 CA1P00915 261 aaPredicted RBP15.12■□□□□ 0.01
CPSF3-201ENST00000238112 SRIP30626 198 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 BSPH1Q075Z2 132 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 ZNF331Q9NQX6 463 aaPredicted RBP15.12■□□□□ 0.01
CPSF3-201ENST00000238112 TBL2Q9Y4P3 447 aaKnown RBP15.12■□□□□ 0.01
CPSF3-201ENST00000238112 AMTP48728 403 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 KRTDAPP60985 99 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 VMA21Q3ZAQ7 101 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 ZNF329Q86UD4 541 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 SSUH2Q9Y2M2 353 aa15.12■□□□□ 0.01
CPSF3-201ENST00000238112 RP1L1Q8IWN7 2480 aaPredicted RBP15.12■□□□□ 0.01
CPSF3-201ENST00000238112 CNOT1A5YKK6 2376 aaKnown RBP15.11■□□□□ 0.01
CPSF3-201ENST00000238112 A0A0G2JNJ9 132 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 BMPR1BO00238 502 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 PEX7O00628 323 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 APCSP02743 223 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 PATE2Q6UY27 113 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 LINC00311Q8N616 119 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 MIEN1Q9BRT3 115 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 Q9UFV3 132 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 FBXL7Q9UJT9 491 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 IGLV2-23P01705 113 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 LYPD2Q6UXB3 125 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 C8orf31Q8N9H6 132 aa15.11■□□□□ 0.01
CPSF3-201ENST00000238112 SSBP3Q9BWW4 388 aaPredicted RBP15.11■□□□□ 0.01
CPSF3-201ENST00000238112 IGKV1D-37A0A075B6S9 117 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 PRRG2O14669 202 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 SLC25A17O43808 307 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 PMCHP20382 165 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 TDGF1P3P51864 188 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 THAP8Q8NA92 274 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 RCHY1Q96PM5 261 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 FAM231DQ6ZW35 169 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 ASCL5Q7RTU5 278 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 LINC00305Q7Z4B0 112 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 ZNF596Q8TC21 504 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 FAM168AQ92567 244 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 NEU1Q99519 415 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 NRN1Q9NPD7 142 aa15.1■□□□□ 0.01
CPSF3-201ENST00000238112 TRAV34A0A0B4J273 112 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 A0A1W2PS18 150 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 M0QZK8 103 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 REG1AP05451 166 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 COMPP49747 757 aaPredicted RBP15.09■□□□□ 0.01
CPSF3-201ENST00000238112 ST6GALNAC6Q969X2 333 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 FXYD5Q96DB9 178 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 DIRC3C9JPN6 131 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 KLK10O43240 276 aa15.09■□□□□ 0.01
CPSF3-201ENST00000238112 MC5RP33032 325 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms