RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PLEKHB2Q96CS7 222 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 MGLLQ99685 303 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 ZNF286AQ9HBT8 521 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 FAM60AQ9NP50 221 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 MED29Q9NX70 200 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 FBXL12Q9NXK8 326 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 COPZ2Q9P299 210 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 CKLFQ9UBR5 152 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SLC23A2Q9UGH3 650 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SNX12Q9UMY4 172 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 MRPS16Q9Y3D3 137 aaKnown RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 PHLDA3Q9Y5J5 127 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SCN10AQ9Y5Y9 1956 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 RALGAPA2Q2PPJ7 1873 aa1.26□□□□□ -2.21
CD44-239ENST00000639002 SYNE2Q8WXH0 6885 aaKnown RBP1.26□□□□□ -2.21
CD44-239ENST00000639002 NCOA3Q9Y6Q9 1424 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 OTOFQ9HC10 1997 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DNHD1Q96M86 4753 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 ZNF106Q9H2Y7 1883 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 A0A0J9YY10 115 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 TMEM269A0A1B0GVZ9 245 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 A0A1B0GX78 115 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DHRS12A0PJE2 317 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 GRIFINA4D1Z8 144 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 A6NED7 52 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SIGLEC16A6NMB1 481 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 A8MWP6 167 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 C9JCJ5 164 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 I3L521 148 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 J3KT08 172 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 LST1O00453 97 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DEGS1O15121 323 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SH2D1AO60880 128 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SULT1C4O75897 302 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 ZNF682O95780 498 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SLC25A16P16260 332 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 OGNP20774 298 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BOP23527 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 S100A7P31151 101 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SDC4P31431 198 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BBP33778 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 RPL27AP46776 148 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 CSN1S1P47710 185 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 ATP5G3P48201 142 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DAPP51397 102 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 PIGPP57054 158 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 KLF3P57682 345 aaPredicted RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BDP58876 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 LINC00313P59037 77 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 FGF12P61328 243 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H4AP62805 103 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BCP62807 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 RPL30P62888 115 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 FKBP1AP62942 108 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 DHRS2Q13268 280 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST2H2BEQ16778 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DEFB115Q30KQ5 88 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 LGALSLQ3ZCW2 172 aaPredicted RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 BCL2L15Q5TBC7 163 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 LYZL2Q7Z4W2 148 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 TRAPPC6BQ86SZ2 158 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 NUP35Q8NFH5 326 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 BPIFB6Q8NFQ5 453 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 OR5A1Q8NGJ0 315 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 OR13C8Q8NGS7 320 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DNAJC9Q8WXX5 260 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BHQ93079 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 CAPZA3Q96KX2 299 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 CGREF1Q99674 301 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BNQ99877 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 HIST1H2BMQ99879 126 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 OR2J1Q9GZK6 312 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 TMEM126AQ9H061 195 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 TMEM222Q9H0R3 208 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 C11orf68Q9H3H3 251 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 EFCAB1Q9HAE3 211 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 LRTM1Q9HBL6 345 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 XAGE1AQ9HD64 81 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 RASL12Q9NYN1 266 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 RPUSD1Q9UJJ7 312 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 COQ4Q9Y3A0 265 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 SVILO95425 2214 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 REV3LO60673 3130 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 DOCK6Q96HP0 2047 aa1.25□□□□□ -2.21
CD44-239ENST00000639002 EPPK1P58107 5090 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 FN1P02751 2386 aaKnown RBP1.25□□□□□ -2.21
CD44-239ENST00000639002 SETD5Q9C0A6 1442 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ECM29Q5VYK3 1845 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ROBO3Q96MS0 1386 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 ADGBQ8N7X0 1667 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TRBV24-1A0A075B6N3 115 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TRAV38-1A0A0B4J264 116 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TRAV4A0A0B4J268 109 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 A8MUN3 132 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CLDN25C9JDP6 229 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 PLA2G10O15496 165 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 CYB5BO43169 146 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 SLC25A20O43772 301 aa1.24□□□□□ -2.21
CD44-239ENST00000639002 TPST1O60507 370 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms