RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SMCO1Q147U7 214 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 NMSQ5H8A3 153 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 PLET1Q6UQ28 207 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 LRTM2Q8N967 370 aa15.82■□□□□ 0.12
CLN3-240ENST00000631023 GAR1Q9NY12 217 aaKnown RBP15.82■□□□□ 0.12
CLN3-240ENST00000631023 K7EIM0 57 aa15.81■□□□□ 0.12
CLN3-240ENST00000631023 ZNF256Q9Y2P7 627 aaPredicted RBP15.81■□□□□ 0.12
CLN3-240ENST00000631023 IGHV3-21A0A0B4J1V1 117 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 A0A1B0GU03 582 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 WI2-2373I1.2A0A1W2PRP0 233 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 CEBPZOSA8MTT3 80 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 LGALS9O00182 355 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 CORTO00230 105 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 ZNF846Q147U1 533 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 ANKRD55Q3KP44 614 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 SPSB3Q6PJ21 355 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 BSCL2Q96G97 398 aaPredicted RBP15.8■□□□□ 0.12
CLN3-240ENST00000631023 HEYLQ9NQ87 328 aaPredicted RBP15.8■□□□□ 0.12
CLN3-240ENST00000631023 SIGLEC8Q9NYZ4 499 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 FLVCR2Q9UPI3 526 aa15.8■□□□□ 0.12
CLN3-240ENST00000631023 HTR2BP41595 481 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 MFAP4P55083 255 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 Q56UQ5 140 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 IL34Q6ZMJ4 242 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 PINX1Q96BK5 328 aaKnown RBP15.79■□□□□ 0.12
CLN3-240ENST00000631023 HIPK2Q9H2X6 1198 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 ZC4H2Q9NQZ6 224 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 TMED3Q9Y3Q3 217 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 ZNF320A2RRD8 509 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 C9orf170A2RU37 121 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 OR2T8A6NH00 312 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 I3L2K1 104 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 K7EIL1 84 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 TGOLN2O43493 480 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 MT-CO2P00403 227 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 RNASE2P10153 161 aaKnown RBP15.79■□□□□ 0.12
CLN3-240ENST00000631023 DCTN2Q13561 401 aaKnown RBP15.79■□□□□ 0.12
CLN3-240ENST00000631023 UBAC2Q8NBM4 344 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 OR1S1Q8NH92 325 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 TXN2Q99757 166 aa15.79■□□□□ 0.12
CLN3-240ENST00000631023 PRKDCP78527 4128 aaKnown RBP15.78■□□□□ 0.12
CLN3-240ENST00000631023 LY86O95711 162 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 IGLV1-51P01701 117 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 CSN3P07498 182 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 OR4E1P0C645 316 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 SLC25A6P12236 298 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 TNFRSF9Q07011 255 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 C4orf46Q504U0 113 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 DEFB121Q5J5C9 76 aa15.78■□□□□ 0.12
CLN3-240ENST00000631023 FCGR2BP31994 310 aaPredicted RBP15.77■□□□□ 0.11
CLN3-240ENST00000631023 MZT2BQ6NZ67 158 aa15.77■□□□□ 0.11
CLN3-240ENST00000631023 LYG2Q86SG7 212 aa15.77■□□□□ 0.11
CLN3-240ENST00000631023 COQ8AQ8NI60 647 aa15.77■□□□□ 0.11
CLN3-240ENST00000631023 PALMDQ9NP74 551 aa15.77■□□□□ 0.11
CLN3-240ENST00000631023 HSPB7Q9UBY9 170 aa15.77■□□□□ 0.11
CLN3-240ENST00000631023 NXPH3O95157 252 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 TCRBP04435 133 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 SPNP16150 400 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 ANXA7P20073 488 aaKnown RBP15.76■□□□□ 0.11
CLN3-240ENST00000631023 DHRS2Q13268 280 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 BSXQ3C1V8 233 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 PVRIGQ6DKI7 326 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 NOXA1Q86UR1 476 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 PRR25Q96S07 402 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 C20orf85Q9H1P6 137 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 TGP01266 2768 aa15.76■□□□□ 0.11
CLN3-240ENST00000631023 NUPL2O15504 423 aaKnown RBP15.75■□□□□ 0.11
CLN3-240ENST00000631023 HOXB5P09067 269 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 DUSP18Q8NEJ0 188 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 SLC24A4Q8NFF2 622 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 C2orf70A6NJV1 201 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 UPK1BO75841 260 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 NPBWR1P48145 328 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 ZNF436Q9C0F3 470 aaPredicted RBP15.75■□□□□ 0.11
CLN3-240ENST00000631023 U3KQ87 197 aa15.75■□□□□ 0.11
CLN3-240ENST00000631023 IGHV3-35A0A0C4DH35 117 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 FAM240BA0A1B0GVZ2 78 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 A8MWP6 167 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 F8W735 103 aaPredicted RBP15.74■□□□□ 0.11
CLN3-240ENST00000631023 GNG7O60262 68 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 PITX3O75364 302 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 IGHV3-48P01763 117 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 CTSGP08311 255 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 FOLR2P14207 255 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 OPRK1P41145 380 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 RELQ04864 619 aaPredicted RBP15.74■□□□□ 0.11
CLN3-240ENST00000631023 ASAH1Q13510 395 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 C2orf83Q53S99 150 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 HAPLN4Q86UW8 402 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 DYNLRB2Q8TF09 96 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 CHRDL1Q9BU40 450 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 RBKSQ9H477 322 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 UFC1Q9Y3C8 167 aa15.74■□□□□ 0.11
CLN3-240ENST00000631023 FAM90A26D6RGX4 464 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 IFNA21P01568 189 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 GP9P14770 177 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 CBLN1P23435 193 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 ELLP55199 621 aaPredicted RBP15.73■□□□□ 0.11
CLN3-240ENST00000631023 GGNBP1Q5YKI7 109 aa15.73■□□□□ 0.11
CLN3-240ENST00000631023 LCN12Q6JVE5 192 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms