RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RORCP51449 518 aa8.83□□□□□ -1
UPF3B-204ENST00000619445 RNASE10Q5GAN6 216 aaKnown RBP8.83□□□□□ -1
UPF3B-204ENST00000619445 CEMP1Q6PRD7 247 aaPredicted RBP8.83□□□□□ -1
UPF3B-204ENST00000619445 SNX29P2Q8IUI4 249 aa8.83□□□□□ -1
UPF3B-204ENST00000619445 DUSP18Q8NEJ0 188 aa8.83□□□□□ -1
UPF3B-204ENST00000619445 PDCD10Q9BUL8 212 aa8.83□□□□□ -1
UPF3B-204ENST00000619445 MAP6D1Q9H9H5 199 aa8.83□□□□□ -1
UPF3B-204ENST00000619445 ALMS1Q8TCU4 4167 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 TRAV2A0A0B4J234 112 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 DFFBO76075 338 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 PMS2P11Q13670 270 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 SLC35G3Q8N808 338 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 ZFAND1Q8TCF1 268 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 MRGPRFQ96AM1 343 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 RNF2Q99496 336 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 MFFQ9GZY8 342 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 CSTL1Q9H114 145 aa8.82□□□□□ -1
UPF3B-204ENST00000619445 A0A1W2PS18 150 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 DBX1A6NMT0 343 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 ZNF207O43670 478 aaKnown RBP8.81□□□□□ -1
UPF3B-204ENST00000619445 PGAM2P15259 253 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 AKR1C2P52895 323 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 ZNF600Q6ZNG1 722 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 CCDC71LQ8N9Z2 235 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 PINX1Q96BK5 328 aaKnown RBP8.81□□□□□ -1
UPF3B-204ENST00000619445 FUNDC2Q9BWH2 189 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 ENY2Q9NPA8 101 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 CACFD1Q9UGQ2 172 aa8.81□□□□□ -1
UPF3B-204ENST00000619445 EPPK1P58107 5090 aaKnown RBP8.8□□□□□ -1
UPF3B-204ENST00000619445 PLECQ15149 4684 aaKnown RBP8.8□□□□□ -1
UPF3B-204ENST00000619445 IGHV3OR16-8A0A075B7F1 116 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 FAM25AB3EWG3 89 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 FAM25CB3EWG5 89 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 FAM25GB3EWG6 89 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 LY6G6CO95867 125 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 IFNA17P01571 189 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 IGKV1-39P01597 117 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 IGKV1D-39P04432 117 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 RPL35AP18077 110 aaKnown RBP8.8□□□□□ -1
UPF3B-204ENST00000619445 ELK1P19419 428 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 PIGPP57054 158 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 NCS1P62166 190 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 TMEM41BQ5BJD5 291 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 FAM90A2PQ658T7 463 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 RRNAD1Q96FB5 475 aaKnown RBP8.8□□□□□ -1
UPF3B-204ENST00000619445 NARS2Q96I59 477 aaKnown RBP8.8□□□□□ -1
UPF3B-204ENST00000619445 COPZ2Q9P299 210 aa8.8□□□□□ -1
UPF3B-204ENST00000619445 DNASE2O00115 360 aaPredicted RBP8.79□□□□□ -1
UPF3B-204ENST00000619445 ST8SIA3O43173 380 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 HPGDSO60760 199 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 VBP1P61758 197 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 SSBP1Q04837 148 aaKnown RBP8.79□□□□□ -1
UPF3B-204ENST00000619445 TOMM20LQ6UXN7 152 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 TCF24Q7RTU0 167 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 LHFPL1Q86WI0 220 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 FAM219AQ8IW50 185 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 TERB2Q8NHR7 220 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 RARRES2Q99969 163 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 C11orf68Q9H3H3 251 aaKnown RBP8.79□□□□□ -1
UPF3B-204ENST00000619445 VSIRQ9H7M9 311 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 MTFP1Q9UDX5 166 aa8.79□□□□□ -1
UPF3B-204ENST00000619445 BIRC6Q9NR09 4857 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 TRAV30A0A087WSZ9 112 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 C3orf85A0A1B0GTC6 90 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 M0QYG6 137 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 ZNF182P17025 639 aaPredicted RBP8.78□□□□□ -1
UPF3B-204ENST00000619445 NPPCP23582 126 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 RPL5P46777 297 aaKnown RBP8.78□□□□□ -1
UPF3B-204ENST00000619445 EIF2B2P49770 351 aaKnown RBP8.78□□□□□ -1
UPF3B-204ENST00000619445 TCTAP57738 103 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 TAS2R19P59542 299 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 MRPS10P82664 201 aaKnown RBP8.78□□□□□ -1
UPF3B-204ENST00000619445 TRIM16LQ309B1 348 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 PVRIGQ6DKI7 326 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 APRG1Q8IVJ8 170 aa8.78□□□□□ -1
UPF3B-204ENST00000619445 RNASE11Q8TAA1 199 aaKnown RBP8.78□□□□□ -1
UPF3B-204ENST00000619445 PUS1Q9Y606 427 aaKnown RBP eCLIP8.78□□□□□ -1
UPF3B-204ENST00000619445 HYDINQ4G0P3 5121 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 A0A0B4J293 547 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 RPS10-NUDT3A0A1W2PQS6 291 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 TMEM50AO95807 157 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 IGKV1-5P01602 117 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 CD3DP04234 171 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 IFNA4P05014 189 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 P0C879 139 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 UCP1P25874 307 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 TFPI2P48307 235 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 HOXA1P49639 335 aaPredicted RBP8.77□□□□□ -1.01
UPF3B-204ENST00000619445 RPL11P62913 178 aaKnown RBP8.77□□□□□ -1.01
UPF3B-204ENST00000619445 MEF2DQ14814 521 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 TMEM229BQ8NBD8 167 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 OR52E5Q8NH55 327 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 PHLDA1Q8WV24 401 aaPredicted RBP8.77□□□□□ -1.01
UPF3B-204ENST00000619445 GRAMD2BQ96HH9 432 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 METTL26Q96S19 204 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 RABL2AQ9UBK7 228 aaPredicted RBP8.77□□□□□ -1.01
UPF3B-204ENST00000619445 KLK11Q9UBX7 282 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 RABL2BQ9UNT1 228 aa8.77□□□□□ -1.01
UPF3B-204ENST00000619445 IGKV3-7A0A075B6H7 116 aa8.76□□□□□ -1.01
UPF3B-204ENST00000619445 IGHV3-49A0A0A0MS15 119 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms