RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 SCPEP1Q9HB40 452 aa13.11□□□□□ -0.31
SHKBP1-227ENST00000602011 NEDD8Q15843 81 aa13.1□□□□□ -0.31
SHKBP1-227ENST00000602011 LYSMD2Q8IV50 215 aa13.1□□□□□ -0.31
SHKBP1-227ENST00000602011 SAMD12Q8N8I0 201 aa13.1□□□□□ -0.31
SHKBP1-227ENST00000602011 MISP3Q96FF7 219 aa13.1□□□□□ -0.31
SHKBP1-227ENST00000602011 SEC22AQ96IW7 307 aa13.1□□□□□ -0.31
SHKBP1-227ENST00000602011 IGHV3OR16-8A0A075B7F1 116 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 INS-IGF2F8WCM5 200 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 ATG12O94817 140 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 MT-CO2P00403 227 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 HRH1P35367 487 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 SUB1P53999 127 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 RBMS2Q15434 407 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 OR11H2Q8NH07 326 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 VSIRQ9H7M9 311 aa13.09□□□□□ -0.31
SHKBP1-227ENST00000602011 HECTD4Q9Y4D8 3996 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 A0A1W2PS18 150 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 DNASE2O00115 360 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 CORTO00230 105 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 SCGB2A1O75556 95 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 SNCAP37840 140 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 RPS19P39019 145 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 TMEM187Q14656 261 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 ZNF600Q6ZNG1 722 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 TCF24Q7RTU0 167 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 TBC1D26Q86UD7 250 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 GPX8Q8TED1 209 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 FXYD6Q9H0Q3 95 aa13.08□□□□□ -0.32
SHKBP1-227ENST00000602011 DBX1A6NMT0 343 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 C11orf94C9JXX5 98 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 HLA-DMAP28067 261 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 TFPI2P48307 235 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 PHLDA2Q53GA4 152 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 TOMM20LQ6UXN7 152 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 C2CD4CQ8TF44 421 aa13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 ZNF486Q96H40 463 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-227ENST00000602011 ST8SIA3O43173 380 aa13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 APOA1P02647 267 aa13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 RCVRNP35243 200 aa13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 MRPS26Q9BYN8 205 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 HRH4Q9H3N8 390 aa13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 VPS13DQ5THJ4 4388 aa13.06□□□□□ -0.32
SHKBP1-227ENST00000602011 NPPCP23582 126 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 RND3P61587 244 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 CENPSQ8N2Z9 138 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 GBGT1Q8N5D6 347 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 PINX1Q96BK5 328 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 ZNF414Q96IQ9 312 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 MS4A6AQ9H2W1 248 aa13.05□□□□□ -0.32
SHKBP1-227ENST00000602011 KIAA1109Q2LD37 5005 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 IGKV3-7A0A075B6H7 116 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 TMEM50AO95807 157 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 CA1P00915 261 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 RPL11P62913 178 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 PVRIGQ6DKI7 326 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 MORN3Q6PF18 240 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 STHQ8IWL8 128 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 NARS2Q96I59 477 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 PDCD10Q9BUL8 212 aa13.04□□□□□ -0.32
SHKBP1-227ENST00000602011 IGHV3-49A0A0A0MS15 119 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 B3GALNT1O75752 331 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 IGKV1-39P01597 117 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 IGKV1D-39P04432 117 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 RPL5P46777 297 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 NANOS2P60321 138 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 ST8SIA2Q92186 375 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 MRGPRFQ96AM1 343 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 GRAMD2BQ96HH9 432 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 FBXL17Q9UF56 701 aa13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 PUS1Q9Y606 427 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHKBP1-227ENST00000602011 TRAV30A0A087WSZ9 112 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 IFNA17P01571 189 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 SPP1P10451 314 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 EIF2B2P49770 351 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 DEFB131AP59861 70 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 ZNF124Q15973 351 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 SLC35G3Q8N808 338 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 YIPF6Q96EC8 236 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 METTL26Q96S19 204 aa13.02□□□□□ -0.33
SHKBP1-227ENST00000602011 DNAH6Q9C0G6 4158 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 IGHV3OR16-13A0A075B7E8 117 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 IGHV3-74A0A0B4J1X5 117 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 SMIM18P0DKX4 95 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 MIFP14174 115 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 TBPP20226 339 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 ARRDC1Q8N5I2 433 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 OR4X1Q8NH49 305 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 C15orf40Q8WUR7 153 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 ZFAND3Q9H8U3 227 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 ENY2Q9NPA8 101 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 COMMD3Q9UBI1 195 aa13.01□□□□□ -0.33
SHKBP1-227ENST00000602011 CLN5O75503 358 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 IGHV3-48P01763 117 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 CRYBB3P26998 211 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 AP2S1P53680 142 aaPredicted RBP13□□□□□ -0.33
SHKBP1-227ENST00000602011 ZFAND1Q8TCF1 268 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 CACFD1Q9UGQ2 172 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 RABAC1Q9UI14 185 aa13□□□□□ -0.33
SHKBP1-227ENST00000602011 A0A0B4J293 547 aa12.99□□□□□ -0.33
SHKBP1-227ENST00000602011 PGAM2P15259 253 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms