RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 NPBWR1P48145 328 aa10.06□□□□□ -0.8
TRIM28-211ENST00000597968 RORCP51449 518 aa10.06□□□□□ -0.8
TRIM28-211ENST00000597968 RND3P61587 244 aa10.06□□□□□ -0.8
TRIM28-211ENST00000597968 RNF2Q99496 336 aa10.06□□□□□ -0.8
TRIM28-211ENST00000597968 UBQLN2Q9UHD9 624 aa10.06□□□□□ -0.8
TRIM28-211ENST00000597968 IGHV3-21A0A0B4J1V1 117 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 DBX1A6NMT0 343 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 MPTX1A8MV57 137 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 M0QYG6 137 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 GNG7O60262 68 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 SCGB2A1O75556 95 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 MT-CO2P00403 227 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 SUB1P53999 127 aaKnown RBP eCLIP10.05□□□□□ -0.85e-7■□□□□ 9
TRIM28-211ENST00000597968 CTF1Q16619 201 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 FAM90A2PQ658T7 463 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 ARRDC1Q8N5I2 433 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 DUSP18Q8NEJ0 188 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 C15orf40Q8WUR7 153 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 MFFQ9GZY8 342 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 TMEM231Q9H6L2 316 aa10.05□□□□□ -0.8
TRIM28-211ENST00000597968 FAM25AB3EWG3 89 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 FAM25CB3EWG5 89 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 FAM25GB3EWG6 89 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 YIF1AO95070 293 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 LY6G6CO95867 125 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 SNCAP37840 140 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 TCTAP57738 103 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 GPR107Q5VW38 600 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 PVRIGQ6DKI7 326 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 MISP3Q96FF7 219 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 C11orf68Q9H3H3 251 aaKnown RBP10.04□□□□□ -0.8
TRIM28-211ENST00000597968 VSIRQ9H7M9 311 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 KLK11Q9UBX7 282 aa10.04□□□□□ -0.8
TRIM28-211ENST00000597968 A0A1W2PS18 150 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 IGKV1-39P01597 117 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 IGKV1D-39P04432 117 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 PMS2P11Q13670 270 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 TMEM41BQ5BJD5 291 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 LGALS9CQ6DKI2 356 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 MZT2AQ6P582 158 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 ZNF600Q6ZNG1 722 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 AP3S1Q92572 193 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 MRGPRFQ96AM1 343 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 ZNF414Q96IQ9 312 aa10.03□□□□□ -0.8
TRIM28-211ENST00000597968 GABARAPO95166 117 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 RPL35AP18077 110 aaKnown RBP10.02□□□□□ -0.81
TRIM28-211ENST00000597968 PI3P19957 117 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 RPL5P46777 297 aaKnown RBP10.02□□□□□ -0.81
TRIM28-211ENST00000597968 LHFPL1Q86WI0 220 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 OR52I2Q8NH67 350 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 ABHD1Q96SE0 405 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 RARRES2Q99969 163 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 PDCD10Q9BUL8 212 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 CACFD1Q9UGQ2 172 aa10.02□□□□□ -0.81
TRIM28-211ENST00000597968 KMT2AQ03164 3969 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 ZNF207O43670 478 aaKnown RBP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 P0C879 139 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 ZNF182P17025 639 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 EWSR1Q01844 656 aaKnown RBP eCLIP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 IZUMO4Q1ZYL8 232 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 RNASE10Q5GAN6 216 aaKnown RBP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 TOMM20LQ6UXN7 152 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 TCF24Q7RTU0 167 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 APRG1Q8IVJ8 170 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 FAM219AQ8IW50 185 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 SLC35G3Q8N808 338 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 ZFAND1Q8TCF1 268 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 PHLDA1Q8WV24 401 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 PINX1Q96BK5 328 aaKnown RBP10.01□□□□□ -0.81
TRIM28-211ENST00000597968 EXTL2Q9UBQ6 330 aa10.01□□□□□ -0.81
TRIM28-211ENST00000597968 IGHV3OR16-8A0A075B7F1 116 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 TRAV30A0A087WSZ9 112 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 DNASE2O00115 360 aaPredicted RBP10□□□□□ -0.81
TRIM28-211ENST00000597968 ST8SIA3O43173 380 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 TMEM50AO95807 157 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 CD3DP04234 171 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 AKR1C2P52895 323 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 PIGPP57054 158 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 SSBP1Q04837 148 aaKnown RBP10□□□□□ -0.81
TRIM28-211ENST00000597968 AARDQ4LEZ3 155 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 CCDC71LQ8N9Z2 235 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 OR4D10Q8NGI6 311 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 GRAMD2BQ96HH9 432 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 MIXL1Q9H2W2 232 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 ZFAND3Q9H8U3 227 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 MTFP1Q9UDX5 166 aa10□□□□□ -0.81
TRIM28-211ENST00000597968 A0A0B4J293 547 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 C3orf85A0A1B0GTC6 90 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 CTDSP2O14595 271 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 IFNA17P01571 189 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 IFNA4P05014 189 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 PGAM2P15259 253 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 NPPCP23582 126 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 ALDH3B2P48448 385 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 TMEM187Q14656 261 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 SPCS2Q15005 226 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 SPINK9Q5DT21 86 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 OR4X1Q8NH49 305 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 OR52E5Q8NH55 327 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 TERB2Q8NHR7 220 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms