RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 IGHV3-49A0A0A0MS15 119 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 INS-IGF2F8WCM5 200 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 IGHV3-48P01763 117 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 CD5P06127 495 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 P0C879 139 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 ELK1P19419 428 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 NCS1P62166 190 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 ERHP84090 104 aaKnown RBP12.59□□□□□ -0.39
CLN3-216ENST00000565316 ZNF124Q15973 351 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 PVRIGQ6DKI7 326 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 GATAD1Q8WUU5 269 aa12.59□□□□□ -0.39
CLN3-216ENST00000565316 MPTX1A8MV57 137 aa12.58□□□□□ -0.4
CLN3-216ENST00000565316 GNG7O60262 68 aa12.58□□□□□ -0.4
CLN3-216ENST00000565316 TNFAIP8O95379 198 aa12.58□□□□□ -0.4
CLN3-216ENST00000565316 TOMM20LQ6UXN7 152 aa12.58□□□□□ -0.4
CLN3-216ENST00000565316 ZNF486Q96H40 463 aaPredicted RBP12.58□□□□□ -0.4
CLN3-216ENST00000565316 VSIRQ9H7M9 311 aa12.58□□□□□ -0.4
CLN3-216ENST00000565316 A0A0B4J293 547 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 M0QYG6 137 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 HPGDSO60760 199 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 IGKV1-5P01602 117 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 NPBWR1P48145 328 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 TFPI2P48307 235 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 IZUMO4Q1ZYL8 232 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 LHFPL1Q86WI0 220 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 LILRB2Q8N423 598 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 PHLDA1Q8WV24 401 aaPredicted RBP12.57□□□□□ -0.4
CLN3-216ENST00000565316 PINX1Q96BK5 328 aaKnown RBP12.57□□□□□ -0.4
CLN3-216ENST00000565316 GINS3Q9BRX5 216 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 FUNDC2Q9BWH2 189 aa12.57□□□□□ -0.4
CLN3-216ENST00000565316 VPS13DQ5THJ4 4388 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 IGHV3OR16-13A0A075B7E8 117 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 IGHV3-74A0A0B4J1X5 117 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 VBP1P61758 197 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 PAFAH1B2P68402 229 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 TCF24Q7RTU0 167 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 GBGT1Q8N5D6 347 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 DUSP18Q8NEJ0 188 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 ST8SIA2Q92186 375 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 RARRES2Q99969 163 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 ZFAND3Q9H8U3 227 aa12.56□□□□□ -0.4
CLN3-216ENST00000565316 IGKV3-7A0A075B6H7 116 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 TRAV2A0A0B4J234 112 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 APOHP02749 345 aaPredicted RBP12.55□□□□□ -0.4
CLN3-216ENST00000565316 SPINK9Q5DT21 86 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 ZNF600Q6ZNG1 722 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 TP53RKQ96S44 253 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 MS4A6AQ9H2W1 248 aa12.55□□□□□ -0.4
CLN3-216ENST00000565316 C11orf68Q9H3H3 251 aaKnown RBP12.55□□□□□ -0.4
CLN3-216ENST00000565316 ST8SIA3O43173 380 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 DFFBO76075 338 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 TMEM50AO95807 157 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 PI3P19957 117 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 TBPP20226 339 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 SNCAP37840 140 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 RORCP51449 518 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 PIGPP57054 158 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 ARRDC1Q8N5I2 433 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 KLK11Q9UBX7 282 aa12.54□□□□□ -0.4
CLN3-216ENST00000565316 PUS1Q9Y606 427 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-216ENST00000565316 A0A1B0GU03 582 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 ATG12O94817 140 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 CD3DP04234 171 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 RNASE2P10153 161 aaKnown RBP12.53□□□□□ -0.4
CLN3-216ENST00000565316 PGAM2P15259 253 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 RNASE10Q5GAN6 216 aaKnown RBP12.53□□□□□ -0.4
CLN3-216ENST00000565316 LGALS9CQ6DKI2 356 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 SLC35G3Q8N808 338 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 OR11H2Q8NH07 326 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 OR52I2Q8NH67 350 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 MTFP1Q9UDX5 166 aa12.53□□□□□ -0.4
CLN3-216ENST00000565316 C3orf85A0A1B0GTC6 90 aa12.52□□□□□ -0.41
CLN3-216ENST00000565316 SUB1P53999 127 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLN3-216ENST00000565316 MZT2AQ6P582 158 aa12.52□□□□□ -0.41
CLN3-216ENST00000565316 DNASE2O00115 360 aaPredicted RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 CORTO00230 105 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 IFNA17P01571 189 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 ETV6P41212 452 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 RPL5P46777 297 aaKnown RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 AKR1C2P52895 323 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 NANOS2P60321 138 aaKnown RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 BSXQ3C1V8 233 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 AARDQ4LEZ3 155 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 RPP25LQ8N5L8 163 aaKnown RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 FAM24BQ8N5W8 94 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 TERB2Q8NHR7 220 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 C11orf45Q8TAV5 145 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 ABHD1Q96SE0 405 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 MFFQ9GZY8 342 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 FNDC4Q9H6D8 234 aaPredicted RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 TMEM231Q9H6L2 316 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 MRPL36Q9P0J6 103 aaKnown RBP12.51□□□□□ -0.41
CLN3-216ENST00000565316 DNAH6Q9C0G6 4158 aa12.51□□□□□ -0.41
CLN3-216ENST00000565316 HECTD4Q9Y4D8 3996 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 IGHV3-66A0A0C4DH42 116 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 FAM25AB3EWG3 89 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 FAM25CB3EWG5 89 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 FAM25GB3EWG6 89 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 CLN5O75503 358 aa12.5□□□□□ -0.41
CLN3-216ENST00000565316 B3GALNT1O75752 331 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms