RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 HIST1H2BNQ99877 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BMQ99879 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 DERL1Q9BUN8 251 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 NMNAT1Q9HAN9 279 aaPredicted RBP1.62□□□□□ -2.15
SCFD1-221ENST00000556534 ARMC1Q9NVT9 282 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 ARL5AQ9Y689 179 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 TTC37Q6PGP7 1564 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 DENND4BO75064 1496 aaPredicted RBP1.62□□□□□ -2.15
SCFD1-221ENST00000556534 CHD8Q9HCK8 2581 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 KIAA2026Q5HYC2 2103 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 EIF3AQ14152 1382 aaKnown RBP1.61□□□□□ -2.15
SCFD1-221ENST00000556534 ABCC8Q09428 1581 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 VWDEQ8N2E2 1590 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 RTEL1-TNFRSF6BF6WH68 1400 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TRAV7A0A075B6U4 112 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 A0A0G2JQZ4 141 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 DPRXA6NFQ7 191 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TMEM238C9JI98 176 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 FNDC10F2Z333 226 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TRAPPC2LH3BP13 241 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 OR5F1O95221 314 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 IGHV3-7P01780 117 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 SERPINE1P05121 402 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 SMIM10L2AP0DMW4 78 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 SMIM10L2BP0DMW5 78 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF90Q03938 601 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 RPL18Q07020 188 aaKnown RBP1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TPRXLQ17RH7 258 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TEX36Q5VZQ5 186 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF705AQ6ZN79 300 aaPredicted RBP1.61□□□□□ -2.15
SCFD1-221ENST00000556534 SLC35E3Q7Z769 313 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 OR13C4Q8NGS5 318 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 CT55Q8WUE5 264 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 RASSF5Q8WWW0 418 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 TOMM6Q96B49 74 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 BTF3L4Q96K17 158 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 DNAJC30Q96LL9 226 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 KIFC1Q9BW19 673 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 C20orf27Q9GZN8 174 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 COMMD5Q9GZQ3 224 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 ENY2Q9NPA8 101 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 NAT8Q9UHE5 227 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 CYSLTR1Q9Y271 337 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 FAM32AQ9Y421 112 aaKnown RBP1.61□□□□□ -2.15
SCFD1-221ENST00000556534 MYH3P11055 1940 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 DCAF1Q9Y4B6 1507 aa1.61□□□□□ -2.15
SCFD1-221ENST00000556534 UNC80Q8N2C7 3258 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 MYH2Q9UKX2 1941 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 BLMP54132 1417 aaPredicted RBP1.6□□□□□ -2.15
SCFD1-221ENST00000556534 A0A1B0GVG6 124 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 RFPL4AA6NLU0 287 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 RFPL4AL1F8VTS6 287 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 PIRO00625 290 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 KLRC4O43908 158 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 C1QAP02745 245 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 G0S2P27469 103 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 G6PCP35575 357 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 GNG10P50151 68 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 DEFA3P59666 94 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 MOGQ16653 247 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF791Q3KP31 576 aaPredicted RBP1.6□□□□□ -2.15
SCFD1-221ENST00000556534 PABPC1L2AQ5JQF8 200 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 RPL22L1Q6P5R6 122 aaKnown RBP1.6□□□□□ -2.15
SCFD1-221ENST00000556534 LYZL1Q6UWQ5 148 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 DEFB132Q7Z7B7 95 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 OR5J2Q8NH18 312 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 ACOT12Q8WYK0 555 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 H1FXQ92522 213 aaKnown RBP1.6□□□□□ -2.15
SCFD1-221ENST00000556534 AP3S1Q92572 193 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 CEP19Q96LK0 163 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 PHB2Q99623 299 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 CXCL16Q9H2A7 254 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 STOML2Q9UJZ1 356 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 SCAF11Q99590 1463 aaKnown RBP1.6□□□□□ -2.15
SCFD1-221ENST00000556534 MUC3AQ02505 3323 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 ZFHX4Q86UP3 3567 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 ABCC2Q92887 1545 aa1.6□□□□□ -2.15
SCFD1-221ENST00000556534 NWD1Q149M9 1564 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 MROH2BQ7Z745 1585 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 CCDC88CQ9P219 2028 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 COL11A1P12107 1806 aaPredicted RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 WDR97A6NE52 1622 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 LRP6O75581 1613 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 CD109Q6YHK3 1445 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 TRAPPC8Q9Y2L5 1435 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 GRIN2AQ12879 1464 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 TCOF1Q13428 1488 aaKnown RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 TRAV9-1A0A075B6T8 112 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 hCG_1818297A0A087WSY0 165 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 TMSB15BA0A087X1C1 80 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 TRGV4A0A0C4DH28 118 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 A8MT66 165 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 FABP5P3A8MUU1 101 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 BUB1B-PAK6H3BSN5 160 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 CREBL2O60519 120 aaPredicted RBP1.59□□□□□ -2.15
SCFD1-221ENST00000556534 OR2B3O76000 313 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 OR2J2O76002 312 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 PPBPP02775 128 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 MSMBP08118 114 aa1.59□□□□□ -2.15
SCFD1-221ENST00000556534 SULT1A3P0DMM9 295 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms