RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 IGHV3-49A0A0A0MS15 119 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 A0A0G2JNJ9 132 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 F5H697 171 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 UPK2O00526 184 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 Q9UFV3 132 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 SRSF7Q16629 238 aaKnown RBP eCLIP13.48□□□□□ -0.251e-8■■■■■ 28.4
CUX1-213ENST00000549414 TMEM177Q53S58 311 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 WDR86Q86TI4 376 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 IMMP2LQ96T52 175 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 IGKV1D-33P01593 117 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 IGKV1-33P01594 117 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 ACAA1P09110 424 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 CDX1P47902 265 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 LOXL3P58215 753 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 LHFPL4Q7Z7J7 247 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 ZNRD1Q9P1U0 126 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 MBD3L4A6NDZ8 208 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 MBD3L3A6NE82 208 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 MBD3L5A6NJ08 208 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 C9JQL5 133 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 ADCYAP1P18509 176 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 RPL23P62829 140 aaKnown RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 PRR30Q53SZ7 412 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 GOLT1AQ6ZVE7 132 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 MBD3L2Q8NHZ7 208 aaPredicted RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 DPM3Q9P2X0 92 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 A8MWL6 223 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 LY6HO94772 140 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 TMEM50AO95807 157 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 C1QTNF9P0C862 333 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 PDLIM4P50479 330 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 OR5R1Q8NH85 324 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 ISLRO14498 428 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 COX19Q49B96 90 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 PGLYRP4Q96LB8 373 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 DCAF16Q9NXF7 216 aa13.47□□□□□ -0.25
CUX1-213ENST00000549414 RPUSD1Q9UJJ7 312 aaKnown RBP13.47□□□□□ -0.25
CUX1-213ENST00000549414 ADAMTS9Q9P2N4 1935 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 NEUROG1Q92886 237 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 WDR83OSQ9Y284 106 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 SMIM17P0DL12 118 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 WT1P19544 449 aaPredicted RBP13.46□□□□□ -0.25
CUX1-213ENST00000549414 TCTAP57738 103 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 ZNF585BQ52M93 769 aa13.46□□□□□ -0.25
CUX1-213ENST00000549414 Q6ZR03 302 aa13.46□□□□□ -0.26
CUX1-213ENST00000549414 GGACTQ9BVM4 153 aa13.46□□□□□ -0.26
CUX1-213ENST00000549414 GNLYP22749 145 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 LEMD1Q68G75 181 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 ELOVL1Q9BW60 279 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 SRIP30626 198 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 BMI1P35226 326 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 MFAP4P55083 255 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 RIGQ13278 110 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 ELOBQ15370 118 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 DTX1Q86Y01 620 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 ANKRD11Q6UB99 2663 aaPredicted RBP13.45□□□□□ -0.26
CUX1-213ENST00000549414 DENND4AQ7Z401 1863 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 LOC389332A0A1B0GUA5 103 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 RNF138Q8WVD3 245 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 ANAPC10Q9UM13 185 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 IGLV3-1P01715 115 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 NBEAP1P0C6P0 100 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 TMEM144Q7Z5S9 345 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 VKORC1Q9BQB6 163 aa13.45□□□□□ -0.26
CUX1-213ENST00000549414 TRBV6-6A0A0A6YYG2 114 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 VAMP3Q15836 100 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 Q6ZN92 141 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 FAM168AQ92567 244 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 FOXA2Q9Y261 457 aaPredicted RBP13.44□□□□□ -0.26
CUX1-213ENST00000549414 DPRXA6NFQ7 191 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 RBFOX2O43251 390 aaKnown RBP eCLIP13.44□□□□□ -0.266e-7■■■□□ 18.3
CUX1-213ENST00000549414 TREML4Q6UXN2 200 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 DYNLRB2Q8TF09 96 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 TMEM133Q9H2Q1 129 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 NPIPB11E5RHQ5 1161 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 MST1LQ2TV78 715 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 KIR3DL3Q8N743 410 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 C7orf69Q9H7B7 122 aa13.44□□□□□ -0.26
CUX1-213ENST00000549414 HIVEP2P31629 2446 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 DIRC3C9JPN6 131 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 PYYP10082 97 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 LYL1P12980 280 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 Q6ZS49 121 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 SRSF12Q8WXF0 261 aaKnown RBP13.43□□□□□ -0.26
CUX1-213ENST00000549414 NEU1Q99519 415 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 AUP1Q9Y679 476 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 ALPK3Q96L96 1907 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 VENTXO95231 258 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 TNCP24821 2201 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 ZNF207O43670 478 aaKnown RBP13.43□□□□□ -0.26
CUX1-213ENST00000549414 SPATA31B1PQ5VZV4 182 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 TMEM14EPQ6UXP3 125 aa13.43□□□□□ -0.26
CUX1-213ENST00000549414 IGHV3-66A0A0C4DH42 116 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 COLCA2A8K830 154 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 FOXH1O75593 365 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 SLC25A33Q9BSK2 321 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 FOXA3P55318 350 aaPredicted RBP13.42□□□□□ -0.26
CUX1-213ENST00000549414 EFNB3Q15768 340 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 TMEM200BQ69YZ2 307 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms