RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TEX38Q6PEX7 206 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 FAM223AQ8IWN6 122 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 RNF152Q8N8N0 203 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 NECAP1Q8NC96 275 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 OR10P1Q8NGE3 313 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 WFDC12Q8WWY7 111 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 TRBV9A0A0B4J1U6 114 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 A0A0D9SG52 128 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 PSMB11A5LHX3 300 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 SH2D7A6NKC9 451 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 S100A11P31949 105 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 ETV3LQ6ZN32 361 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 USMG5Q96IX5 58 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 OR4C12Q96R67 309 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 GAR1Q9NY12 217 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 CUBNO60494 3623 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 A0A0G2JLM5 398 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 CLPSL1A2RUU4 121 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 LINC01548A6NM66 108 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 TAAR5O14804 337 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 IFNA4P05014 189 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 FCGR2BP31994 310 aaPredicted RBP12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 EWSR1Q01844 656 aaKnown RBP eCLIP12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 FOXL1Q12952 345 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 Q5BKY6 102 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 Q6ZS46 218 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 VN1R17PQ8TDU5 208 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 CXorf58Q96LI9 332 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 HSPB11Q9Y547 144 aa12.55□□□□□ -0.4
PRPF40A-212ENST00000545856 G3V318 75 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 H3BP45 60 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 SCGB2A1O75556 95 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 DFFBO76075 338 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 PSMB8P28062 276 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 DLK1P80370 383 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 CD69Q07108 199 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 LINC01006Q8NI28 216 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 TMEM170AQ8WVE7 144 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 FANCD2OSQ96PS1 177 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 MFFQ9GZY8 342 aa12.54□□□□□ -0.4
PRPF40A-212ENST00000545856 FAM24AA6NFZ4 105 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 PMS2P5A8MQ11 134 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 PRSS46E5RG02 174 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 ARPC5O15511 151 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 SLC25A24Q6NUK1 477 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 CENPVQ7Z7K6 275 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 OR4X2Q8NGF9 303 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 WIPF2Q8TF74 440 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 NOL4LQ96MY1 436 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 TXN2Q99757 166 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 ZC4H2Q9NQZ6 224 aa12.53□□□□□ -0.4
PRPF40A-212ENST00000545856 IGSF23A1L1A6 192 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 RNF222A6NCQ9 220 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 SOX15O60248 233 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 REG1AP05451 166 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 METTL15P1P0C7V9 234 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 AP2S1P53680 142 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 ZNF266Q14584 549 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 KCNRGQ8N5I3 272 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 OR5T1Q8NG75 326 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 OR11H4Q8NGC9 324 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 OR1S2Q8NGQ3 325 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 MYOZ3Q8TDC0 251 aa12.52□□□□□ -0.41
PRPF40A-212ENST00000545856 TRBV7-1A0A0A6YYK4 115 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 SMLR1H3BR10 107 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 MPDU1O75352 247 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 APELAP0DMC3 54 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 OPRK1P41145 380 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 MFAP2P55001 183 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 SLC38A11Q08AI6 406 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 VWC2Q2TAL6 325 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 TMEM95Q3KNT9 176 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 LILRB2Q8N423 598 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 KLHDC1Q8N7A1 406 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 TMEM116Q8NCL8 245 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 SLC35E1Q96K37 410 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 PARD6GQ9BYG4 376 aaPredicted RBP12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 PAIP2BQ9ULR5 123 aaKnown RBP12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 RNF114Q9Y508 228 aa12.51□□□□□ -0.41
PRPF40A-212ENST00000545856 I3L2K1 104 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 TRGV3P03979 118 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 NPBWR1P48145 328 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 RAB9AP51151 201 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 PROK1P58294 105 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 EIF5AP63241 154 aaKnown RBP12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 RHOGP84095 191 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 SLC16A13Q7RTY0 426 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 OR5C1Q8NGR4 320 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 MISP3Q96FF7 219 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 TMEM147Q9BVK8 224 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 ZNF355PQ9NSJ1 428 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 FBXL7Q9UJT9 491 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 DMRT1Q9Y5R6 373 aa12.5□□□□□ -0.41
PRPF40A-212ENST00000545856 TRAV30A0A087WSZ9 112 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 K7EIM0 57 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 CST7O76096 145 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 MT-CO2P00403 227 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 HNRNPCP07910 306 aaKnown RBP eCLIP12.49□□□□□ -0.414e-6■■■□□ 18.4
PRPF40A-212ENST00000545856 PF4V1P10720 104 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 TPPP2P59282 170 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms