RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CLEC7AQ9BXN2 247 aa4.36□□□□□ -1.71
USP28-213ENST00000544967 SLC25A22Q9H936 323 aa4.36□□□□□ -1.71
USP28-213ENST00000544967 SOX21Q9Y651 276 aaPredicted RBP4.36□□□□□ -1.71
USP28-213ENST00000544967 A0A0G2JRQ6 117 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 IZUMO1RA6ND01 250 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 BMPR1BO00238 502 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 SH2D1BO14796 132 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 DHHO43323 396 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 CRYGBP07316 175 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 FAM87AP0C7U9 286 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 CCL3P10147 92 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 CD40P25942 277 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 GUCA1AP43080 201 aaPredicted RBP4.35□□□□□ -1.71
USP28-213ENST00000544967 FGF12P61328 243 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 MYBPHQ13203 477 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 TESK1Q15569 626 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 OR1K1Q8NGR3 316 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 TMEM70Q9BUB7 260 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 SCRT2Q9NQ03 307 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 CACNG5Q9UF02 275 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 METRNQ9UJH8 293 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 MAP1BP46821 2468 aaKnown RBP4.35□□□□□ -1.71
USP28-213ENST00000544967 DSPP15924 2871 aaKnown RBP4.35□□□□□ -1.71
USP28-213ENST00000544967 CNOT1A5YKK6 2376 aaKnown RBP4.35□□□□□ -1.71
USP28-213ENST00000544967 A0A0G2JMM0 328 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.35□□□□□ -1.71
USP28-213ENST00000544967 A0A1W2PPB8 328 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 A6NDN8 102 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 C9orf118A6NHY6 69 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 AQP7P3A6NL99 342 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 KIR3DP1A8MWS1 328 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 M0R135 149 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 NDUFB4O95168 129 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 OR9G9P0C7N8 305 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 SPATA12Q7Z6I5 190 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 ZNF645Q8N7E2 425 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 Q8N7P7 452 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 ZNF799Q96GE5 643 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 C16orf92Q96LL3 132 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 TTTY12Q9BZ98 90 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 TMEM191AQ9H0A3 160 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 SIGLEC8Q9NYZ4 499 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 IGF2RP11717 2491 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 FREM3P0C091 2139 aa4.35□□□□□ -1.71
USP28-213ENST00000544967 TRBV20OR9-2A0A075B6H5 130 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 PSMB11A5LHX3 300 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 RER1O15258 196 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1-5P01602 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 PPIAL4GP0DN37 164 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 DAZAP2Q15038 168 aaPredicted RBP4.34□□□□□ -1.71
USP28-213ENST00000544967 NNATQ16517 81 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 FAM27BQ5VT28 67 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 OTPQ5XKR4 325 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 AMMECR1LQ6DCA0 310 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 FOXI2Q6ZQN5 318 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 OR10W1Q8NGF6 305 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 NABP1Q96AH0 204 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 ZNF442Q9H7R0 627 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 UBTD1Q9HAC8 227 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 CCL28Q9NRJ3 127 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 MED29Q9NX70 200 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 JKAMPQ9P055 326 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 NAT8BQ9UHF3 227 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 BAHCC1Q9P281 2608 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 APC2O95996 2303 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1-27A0A075B6S5 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1D-13A0A0B4J2D9 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 C17orf51A8MQB3 221 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 RAB29O14966 203 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 ZIC3O60481 467 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1-39P01597 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1D-39P04432 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IGKV1-13P0DP09 117 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 PLA2G2AP14555 144 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 MALP21145 153 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 PRDX2P32119 198 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 IER3P46695 156 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 CCL11P51671 97 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 DSCR4P56555 118 aaPredicted RBP4.34□□□□□ -1.71
USP28-213ENST00000544967 OR1N2Q8NGR9 330 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 SPATA25Q9BR10 227 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 CDIP1Q9H305 208 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 BOKQ9UMX3 212 aaPredicted RBP4.34□□□□□ -1.71
USP28-213ENST00000544967 CSDC2Q9Y534 153 aaKnown RBP4.34□□□□□ -1.71
USP28-213ENST00000544967 PPIAL4AQ9Y536 164 aa4.34□□□□□ -1.71
USP28-213ENST00000544967 SMG1Q96Q15 3661 aaKnown RBP4.34□□□□□ -1.72
USP28-213ENST00000544967 IGKV1-12A0A0C4DH73 117 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 ZNF816-ZNF321PA0A0X1KG74 233 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 TMEM89A2RUT3 159 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 GAGE10A6NGK3 116 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 TEX22C9J3V5 150 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 E9PLN8 166 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 ZNF207O43670 478 aaKnown RBP4.34□□□□□ -1.72
USP28-213ENST00000544967 IGKV1D-12P01611 117 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 APCSP02743 223 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 FCGR2BP31994 310 aaPredicted RBP4.34□□□□□ -1.72
USP28-213ENST00000544967 MEOX1P50221 254 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 CLDN17P56750 224 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 CD69Q07108 199 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 RSPO1Q2MKA7 263 aaPredicted RBP4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms