RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TIMM23BQ5SRD1 257 aa11.2□□□□□ -0.62
VPS33A-208ENST00000543633 DOLPP1Q86YN1 238 aa11.2□□□□□ -0.62
VPS33A-208ENST00000543633 OSR1Q8TAX0 266 aaPredicted RBP11.2□□□□□ -0.62
VPS33A-208ENST00000543633 CHRDL1Q9BU40 450 aa11.2□□□□□ -0.62
VPS33A-208ENST00000543633 RPUSD1Q9UJJ7 312 aaKnown RBP11.2□□□□□ -0.62
VPS33A-208ENST00000543633 CEP250Q9BV73 2442 aa11.2□□□□□ -0.62
VPS33A-208ENST00000543633 IGKV1OR2-108A0A075B7D4 117 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 MBD3L4A6NDZ8 208 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-208ENST00000543633 MBD3L3A6NE82 208 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-208ENST00000543633 MBD3L5A6NJ08 208 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-208ENST00000543633 F2Z2F3 143 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 DLL1O00548 723 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 AMTP48728 403 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 IGF2-ASQ6U949 168 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 MBD3L2Q8NHZ7 208 aaPredicted RBP11.19□□□□□ -0.62
VPS33A-208ENST00000543633 ITLN1Q8WWA0 313 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 TMEM208Q9BTX3 173 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 HINT2Q9BX68 163 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 RNASE7Q9H1E1 156 aaKnown RBP11.19□□□□□ -0.62
VPS33A-208ENST00000543633 NRN1Q9NPD7 142 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 TEX50A0A1B0GTY4 177 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 A0A1W2PS18 150 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 PSMB11A5LHX3 300 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 BMPR1BO00238 502 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 IGHV3-7P01780 117 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 G0S2P27469 103 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 COL5A1-AS1Q5SY13 56 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 GAFA1Q96PS6 74 aa11.19□□□□□ -0.62
VPS33A-208ENST00000543633 CFAP47Q6ZTR5 3102 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 CD33P20138 364 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 KRTDAPP60985 99 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 TDRG1Q3Y452 100 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 OR1L4Q8NGR5 311 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 LEAP2Q969E1 77 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 MBD6Q96DN6 1003 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 SMIM12Q96EX1 92 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 LPAR2Q9HBW0 351 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 UQCR10Q9UDW1 63 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 GOLT1BQ9Y3E0 138 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 A0A1W2PN81 502 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 APCSP02743 223 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 FRMD6-AS1P0C7T7 363 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 CT45A6P0DMU7 189 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 CT45A5P0DMU8 189 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 CT45A7P0DMV0 189 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 BTF3P20290 206 aaKnown RBP11.18□□□□□ -0.62
VPS33A-208ENST00000543633 PRRX1P54821 245 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 SUMO1P63165 101 aaKnown RBP11.18□□□□□ -0.62
VPS33A-208ENST00000543633 ZNF788Q6ZQV5 615 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 ZNF833PQ6ZTB9 187 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 OR4A5Q8NH83 315 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 FAM167A-AS1Q96KT0 104 aa11.18□□□□□ -0.62
VPS33A-208ENST00000543633 ZNF331Q9NQX6 463 aaPredicted RBP11.18□□□□□ -0.62
VPS33A-208ENST00000543633 LOC400499M0QZD8 3231 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 YLPM1P49750 1951 aaKnown RBP11.17□□□□□ -0.62
VPS33A-208ENST00000543633 APOA2P02652 100 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 SAA1P0DJI8 122 aaPredicted RBP11.17□□□□□ -0.62
VPS33A-208ENST00000543633 SRIP30626 198 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 UBE2L3P68036 154 aaKnown RBP11.17□□□□□ -0.62
VPS33A-208ENST00000543633 FXYD3Q14802 87 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 UTF1Q5T230 341 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 FAM71F2Q6NXP2 309 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 KLHDC1Q8N7A1 406 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 FDCSPQ8NFU4 85 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 SLC25A2Q9BXI2 301 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 LINC00312Q9Y6C7 94 aa11.17□□□□□ -0.62
VPS33A-208ENST00000543633 RAI1Q7Z5J4 1906 aaPredicted RBP11.16□□□□□ -0.62
VPS33A-208ENST00000543633 C20orf202A1L168 122 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 MYOD1P15172 320 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 ZNF83P51522 516 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 CASP6P55212 293 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 BPIFB3P59826 476 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 ERHP84090 104 aaKnown RBP11.16□□□□□ -0.62
VPS33A-208ENST00000543633 NHLH1Q02575 133 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 PMCHL1Q16048 86 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 SPATA45Q537H7 98 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 GRAMD2BQ96HH9 432 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 DNAJC4Q9NNZ3 241 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 GCM1Q9NP62 436 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 NDUFA4L2Q9NRX3 87 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 RNF114Q9Y508 228 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 hADV38S2A0JD32 116 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 M0R1B8 84 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 SPRY3O43610 288 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 MGST1P10620 155 aaKnown RBP11.16□□□□□ -0.62
VPS33A-208ENST00000543633 USF1P22415 310 aaPredicted RBP11.16□□□□□ -0.62
VPS33A-208ENST00000543633 TNFSF4P23510 183 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 SELENOVP59797 346 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 KLF5Q13887 457 aaPredicted RBP11.16□□□□□ -0.62
VPS33A-208ENST00000543633 TMEM177Q53S58 311 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 SPRNQ5BIV9 151 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 TEX36Q5VZQ5 186 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 ATP5L2Q7Z4Y8 100 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 NIT1Q86X76 327 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 OR9G1Q8NH87 305 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 RCHY1Q96PM5 261 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 DSCAMO60469 2012 aa11.16□□□□□ -0.62
VPS33A-208ENST00000543633 OR2J3O76001 311 aa11.15□□□□□ -0.62
VPS33A-208ENST00000543633 GNG10P50151 68 aa11.15□□□□□ -0.62
VPS33A-208ENST00000543633 CCL11P51671 97 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms