RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 LEPROTL1O95214 131 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 PPBPP02775 128 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 MAGEA5P43359 124 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 SSX8Q7RTT4 187 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 MOB3BQ86TA1 216 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 OR52E5Q8NH55 327 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 MCRIP2Q9BUT9 160 aaKnown RBP10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 HES7Q9BYE0 225 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 MRPS17Q9Y2R5 130 aaKnown RBP10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 LSM4Q9Y4Z0 139 aaKnown RBP10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 H0YJW9 148 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 CFIP05156 583 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 SRFP11831 508 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 MYOD1P15172 320 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 PPOXP50336 477 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 EIF4EBP1Q13541 118 aaPredicted RBP10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 LYSMD4Q5XG99 296 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 LEAP2Q969E1 77 aa10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 ZNF430Q9H8G1 570 aaPredicted RBP10.58□□□□□ -0.72
SFSWAP-209ENST00000540469 CNOT1A5YKK6 2376 aaKnown RBP10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 GAGE12BA1L429 117 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 HIGD1CA8MV81 97 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 SNAI2O43623 268 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 ADH4P08319 380 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 NUP35Q8NFH5 326 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 NEUROG1Q92886 237 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 PMCHL2Q9BQD1 86 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 COMMD5Q9GZQ3 224 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 SLC25A10Q9UBX3 287 aaPredicted RBP10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR14LQ5THK1 2151 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 ICE1Q9Y2F5 2266 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 TAX1BP3O14907 124 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 TIMM8AO60220 97 aaPredicted RBP10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 ZNF137PP52743 207 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 OR4S2Q8NH73 311 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 ST20Q9HBF5 79 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 AMMECR1Q9Y4X0 333 aaPredicted RBP10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 TBR1Q16650 682 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 SMIM21Q3B7S5 101 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 Q6ZR03 302 aa10.57□□□□□ -0.72
SFSWAP-209ENST00000540469 A0A087X0K7 114 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 CD46P15529 392 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 HSPE1P61604 102 aaKnown RBP10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 LPAL2Q16609 132 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 BVES-AS1Q5T3Y7 98 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 HES3Q5TGS1 186 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 ABHD17BQ5VST6 288 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 Q8TCH9 128 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 SNRNP40Q96DI7 357 aaKnown RBP10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 NAA38Q9BRA0 125 aaKnown RBP10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 SMPD2O60906 423 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 C8orf88P0DMB2 117 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 CD24P25063 80 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 FABP6P51161 128 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 TMPRSS3P57727 454 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 PSG9Q00887 426 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 LINC00696Q6ZRV3 163 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 HES4Q9HCC6 221 aa10.56□□□□□ -0.72
SFSWAP-209ENST00000540469 C2orf70A6NJV1 201 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 CORTO00230 105 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 CSN3P07498 182 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 UQCRFS1P47985 274 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 ARG2P78540 354 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 FAM162BQ5T6X4 162 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 ACP7Q6ZNF0 438 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 TRAV5A0A0B4J249 113 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 GAGE10A6NGK3 116 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRSS46E5RG02 174 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 CIDEAO60543 219 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 Q0VFX4 171 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 FAM173AQ9BQD7 235 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 ADAMTS20P59510 1910 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 J3QR06 171 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 HIST1H1EP10412 219 aaKnown RBP10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR20EP86478 221 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR20CP86479 221 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR20DP86480 221 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR20BP86481 221 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 PRR20AP86496 221 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 SMIM12Q96EX1 92 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 GRAMD2BQ96HH9 432 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 MAP1LC3CQ9BXW4 147 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 ABI3Q9P2A4 366 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 FREM2Q5SZK8 3169 aa10.55□□□□□ -0.72
SFSWAP-209ENST00000540469 C15orf61A6NNL5 157 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 SYS1-DBNDD2H3BUS1 97 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 RTL8BQ17RB0 113 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 LINC00173Q6ZV60 143 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 TCF24Q7RTU0 167 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 PPP1R32Q7Z5V6 425 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 SPATA12Q7Z6I5 190 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 C1orf159Q96HA4 380 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 CHRDL1Q9BU40 450 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 PEF1Q9UBV8 284 aaKnown RBP10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 OR51B2Q9Y5P1 312 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 A0A1W2PRE2 83 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 CHEK1O14757 476 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 LYZL6O75951 148 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 IGLV2-8P01709 118 aa10.54□□□□□ -0.72
SFSWAP-209ENST00000540469 MPV17P39210 176 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms