RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SELENOHQ8IZQ5 122 aaKnown RBP11.13□□□□□ -0.63
USP28-204ENST00000537642 TMEM61Q8N0U2 210 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 SLC35G3Q8N808 338 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 RNASE11Q8TAA1 199 aaKnown RBP11.13□□□□□ -0.63
USP28-204ENST00000537642 TRIM63Q969Q1 353 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 TMEM230Q96A57 120 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 ZNF414Q96IQ9 312 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 RCHY1Q96PM5 261 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 NEURL2Q9BR09 285 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 TM2D3Q9BRN9 247 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 MCUBQ9NWR8 336 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 SCP2D1Q9UJQ7 156 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 UFC1Q9Y3C8 167 aa11.13□□□□□ -0.63
USP28-204ENST00000537642 KMT2CQ8NEZ4 4911 aaKnown RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 ZNF701M0R085 212 aaPredicted RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 NDUFA4O00483 81 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 MT-CO2P00403 227 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 CTSGP08311 255 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 FCGR2BP31994 310 aaPredicted RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 ETV6P41212 452 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 MFAP4P55083 255 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 KLF9Q13886 244 aaPredicted RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 ZNF79Q15937 498 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 PYDC2Q56P42 97 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 RBPMSQ93062 196 aaKnown RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 MARC2Q969Z3 335 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 TUBA4BQ9H853 241 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 MRPL27Q9P0M9 148 aaKnown RBP11.12□□□□□ -0.63
USP28-204ENST00000537642 TENM3Q9P273 2699 aa11.12□□□□□ -0.63
USP28-204ENST00000537642 IGHV3OR16-8A0A075B7F1 116 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 IGHV3-48P01763 117 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 RNASE2P10153 161 aaKnown RBP11.11□□□□□ -0.63
USP28-204ENST00000537642 S100A5P33763 92 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 AARDQ4LEZ3 155 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 TMEM268Q5VZI3 342 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 PVRIGQ6DKI7 326 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 CCDC190Q86UF4 302 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 FAM219AQ8IW50 185 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 PINX1Q96BK5 328 aaKnown RBP11.11□□□□□ -0.63
USP28-204ENST00000537642 GPR146Q96CH1 333 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 GALNT14Q96FL9 552 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 TXN2Q99757 166 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 PDCD10Q9BUL8 212 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 WFDC10AQ9H1F0 79 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 ZMAT4Q9H898 229 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 GAR1Q9NY12 217 aaKnown RBP11.11□□□□□ -0.63
USP28-204ENST00000537642 PRR13Q9NZ81 148 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 TMEM56-RWDD3S4R434 201 aa11.11□□□□□ -0.63
USP28-204ENST00000537642 SCAF4O95104 1147 aaKnown RBP11.1□□□□□ -0.63
USP28-204ENST00000537642 SNCAP37840 140 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 HOXA1P49639 335 aaPredicted RBP11.1□□□□□ -0.63
USP28-204ENST00000537642 TMEM187Q14656 261 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 HAGHQ16775 308 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 DEFB125Q8N687 156 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 SCGB3A2Q96PL1 93 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 C20orf24Q9BUV8 137 aa11.1□□□□□ -0.63
USP28-204ENST00000537642 DAZ1Q9NQZ3 744 aaKnown RBP11.1□□□□□ -0.63
USP28-204ENST00000537642 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.1□□□□□ -0.63
USP28-204ENST00000537642 TRAV25A0A0B4J276 109 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 OR11H12B2RN74 326 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 K7EMT4 169 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 NUPL2O15504 423 aaKnown RBP11.09□□□□□ -0.63
USP28-204ENST00000537642 ZNF207O43670 478 aaKnown RBP11.09□□□□□ -0.63
USP28-204ENST00000537642 SPCS3P61009 180 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 SUPT4H1P63272 117 aaKnown RBP11.09□□□□□ -0.63
USP28-204ENST00000537642 LINC00322Q6ZN03 302 aaPredicted RBP11.09□□□□□ -0.63
USP28-204ENST00000537642 TOMM5Q8N4H5 51 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 OR52E5Q8NH55 327 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 ENY2Q9NPA8 101 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 CACNG5Q9UF02 275 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 KCNIP3Q9Y2W7 256 aa11.09□□□□□ -0.63
USP28-204ENST00000537642 RBMY1BA6NDE4 496 aaKnown RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 RBMY1EA6NEQ0 496 aaKnown RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 GNG7O60262 68 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 RBMY1DP0C7P1 496 aaKnown RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 AKR1C4P17516 323 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 FAUP35544 74 aaKnown RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 SUB1P53999 127 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP28-204ENST00000537642 AP3S2P59780 193 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 RELQ04864 619 aaPredicted RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 BSXQ3C1V8 233 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 RBPMS2Q6ZRY4 209 aaKnown RBP11.08□□□□□ -0.64
USP28-204ENST00000537642 IL22RA2Q969J5 263 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 SRD5A3Q9H8P0 318 aa11.08□□□□□ -0.64
USP28-204ENST00000537642 C15orf62A8K5M9 175 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 SLC16A13Q7RTY0 426 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 DUSP18Q8NEJ0 188 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 OR52B4Q8NGK2 314 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 OR10C1Q96KK4 312 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 SPATA25Q9BR10 227 aa11.07□□□□□ -0.64
USP28-204ENST00000537642 FNDC4Q9H6D8 234 aaPredicted RBP11.07□□□□□ -0.64
USP28-204ENST00000537642 CORTO00230 105 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 TSPAN4O14817 238 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 YIF1AO95070 293 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 NPBWR1P48145 328 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 MLANAQ16655 118 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 ANKRD55Q3KP44 614 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 NMSQ5H8A3 153 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 SPANXN2Q5MJ10 180 aa11.06□□□□□ -0.64
USP28-204ENST00000537642 LYZL2Q7Z4W2 148 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms